miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18676 5' -64.1 NC_004682.1 + 37615 0.66 0.317706
Target:  5'- cCGA-CGCCGGCCCGGuggaGCaa-GGGCa -3'
miRNA:   3'- -GCUcGCGGCCGGGCUg---CGgcaUCCGc -5'
18676 5' -64.1 NC_004682.1 + 12233 0.66 0.312601
Target:  5'- aGGGUGCCGGUCCacuucuuGcCGCUGUucaccaggagcgacaGGGCGu -3'
miRNA:   3'- gCUCGCGGCCGGG-------CuGCGGCA---------------UCCGC- -5'
18676 5' -64.1 NC_004682.1 + 34717 0.66 0.310432
Target:  5'- gCGAgGUGCUGGaucgcaaCCGGCGCaucggCGUGGGCc -3'
miRNA:   3'- -GCU-CGCGGCCg------GGCUGCG-----GCAUCCGc -5'
18676 5' -64.1 NC_004682.1 + 37248 0.66 0.310432
Target:  5'- cCGGaUGCC-GCCacgGugGCCGUGGGUGg -3'
miRNA:   3'- -GCUcGCGGcCGGg--CugCGGCAUCCGC- -5'
18676 5' -64.1 NC_004682.1 + 23897 0.66 0.306129
Target:  5'- aCGGGCaCCGGCCacacccccgaggacgCGGCuGCCGcgaUGGGCa -3'
miRNA:   3'- -GCUCGcGGCCGG---------------GCUG-CGGC---AUCCGc -5'
18676 5' -64.1 NC_004682.1 + 21270 0.66 0.303286
Target:  5'- aCGGGUGCgGGUCUu-CGCCGUggAGGUa -3'
miRNA:   3'- -GCUCGCGgCCGGGcuGCGGCA--UCCGc -5'
18676 5' -64.1 NC_004682.1 + 40985 0.66 0.289373
Target:  5'- gCGAGCcagcggccugGCCaGCUCGGUGCCGUAGuGCu -3'
miRNA:   3'- -GCUCG----------CGGcCGGGCUGCGGCAUC-CGc -5'
18676 5' -64.1 NC_004682.1 + 11883 0.66 0.289373
Target:  5'- uCGGccuCGCCGGuCCaCGACGCCGagacGGCa -3'
miRNA:   3'- -GCUc--GCGGCC-GG-GCUGCGGCau--CCGc -5'
18676 5' -64.1 NC_004682.1 + 16368 0.66 0.282607
Target:  5'- aGAGCGuCUGGgCUGcACGCCGgucGGUGu -3'
miRNA:   3'- gCUCGC-GGCCgGGC-UGCGGCau-CCGC- -5'
18676 5' -64.1 NC_004682.1 + 7205 0.66 0.282607
Target:  5'- uGAGCacGCUGGCucgccguucaugCCGACGCUGgaacAGGCu -3'
miRNA:   3'- gCUCG--CGGCCG------------GGCUGCGGCa---UCCGc -5'
18676 5' -64.1 NC_004682.1 + 39817 0.67 0.275967
Target:  5'- aGcGCGCC-GCCCGAUGCCuc-GGCu -3'
miRNA:   3'- gCuCGCGGcCGGGCUGCGGcauCCGc -5'
18676 5' -64.1 NC_004682.1 + 2960 0.67 0.275967
Target:  5'- gGGGCGCgGGCggCGGCGCU--GGGCa -3'
miRNA:   3'- gCUCGCGgCCGg-GCUGCGGcaUCCGc -5'
18676 5' -64.1 NC_004682.1 + 14159 0.67 0.263062
Target:  5'- cCGGGCGgCGcuGCCUGACGUgaagGUGGGCu -3'
miRNA:   3'- -GCUCGCgGC--CGGGCUGCGg---CAUCCGc -5'
18676 5' -64.1 NC_004682.1 + 22566 0.67 0.256795
Target:  5'- gGAcaCGCCGGcCCCGAaGCCGaugAGGCu -3'
miRNA:   3'- gCUc-GCGGCC-GGGCUgCGGCa--UCCGc -5'
18676 5' -64.1 NC_004682.1 + 11383 0.67 0.256795
Target:  5'- cCGAGCGaagaCGuGCUCGAUGUCGUgacccugauccaGGGCa -3'
miRNA:   3'- -GCUCGCg---GC-CGGGCUGCGGCA------------UCCGc -5'
18676 5' -64.1 NC_004682.1 + 7048 0.67 0.256795
Target:  5'- uCGAuaGCUGGUCCGAUGuuGUAGccgugcGCGg -3'
miRNA:   3'- -GCUcgCGGCCGGGCUGCggCAUC------CGC- -5'
18676 5' -64.1 NC_004682.1 + 46278 0.67 0.250651
Target:  5'- cCGAGCGaacgCGGCguugCGGCcaucccucugGCCGUGGGCGu -3'
miRNA:   3'- -GCUCGCg---GCCGg---GCUG----------CGGCAUCCGC- -5'
18676 5' -64.1 NC_004682.1 + 28164 0.67 0.244629
Target:  5'- gCGAGCaGCCacGCCCGAgcgucuucguCGCCGagggAGGCa -3'
miRNA:   3'- -GCUCG-CGGc-CGGGCU----------GCGGCa---UCCGc -5'
18676 5' -64.1 NC_004682.1 + 12169 0.67 0.244034
Target:  5'- -aGGCGUugcccugCGGaCCCGACGCCGUggucAGGUu -3'
miRNA:   3'- gcUCGCG-------GCC-GGGCUGCGGCA----UCCGc -5'
18676 5' -64.1 NC_004682.1 + 27490 0.67 0.242846
Target:  5'- aGuGCGCCGacggcgauugugccGCCCGugGCCacccGUAccGGCGa -3'
miRNA:   3'- gCuCGCGGC--------------CGGGCugCGG----CAU--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.