miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18677 3' -54.2 NC_004682.1 + 6154 0.66 0.760981
Target:  5'- cGGCGggccgcugCGAGUCGACGgCUauuucGGCUACGa -3'
miRNA:   3'- -CUGUa-------GCUCAGCUGC-GAa----CCGGUGUg -5'
18677 3' -54.2 NC_004682.1 + 32885 0.66 0.739881
Target:  5'- -cCGUCGGGUCGACGUaacGCUGCGa -3'
miRNA:   3'- cuGUAGCUCAGCUGCGaacCGGUGUg -5'
18677 3' -54.2 NC_004682.1 + 12260 0.66 0.729156
Target:  5'- uACAcCGAgcagGUCGGCGCgauccgugagGGCCGCAUc -3'
miRNA:   3'- cUGUaGCU----CAGCUGCGaa--------CCGGUGUG- -5'
18677 3' -54.2 NC_004682.1 + 27250 0.66 0.718331
Target:  5'- cGGCGcgaagUGGGUCGcCGagcagGGCCACACg -3'
miRNA:   3'- -CUGUa----GCUCAGCuGCgaa--CCGGUGUG- -5'
18677 3' -54.2 NC_004682.1 + 46236 0.67 0.685371
Target:  5'- uGCAUCGAgGUCGAaGcCUUGGCCuCGg -3'
miRNA:   3'- cUGUAGCU-CAGCUgC-GAACCGGuGUg -5'
18677 3' -54.2 NC_004682.1 + 44719 0.67 0.651936
Target:  5'- -uCGUCGGGcaugcCGACGCcgccggUGGCCACGu -3'
miRNA:   3'- cuGUAGCUCa----GCUGCGa-----ACCGGUGUg -5'
18677 3' -54.2 NC_004682.1 + 8552 0.68 0.640738
Target:  5'- cGC-UCGcAGUCGAaggcgaauCGCUuugucUGGCCGCGCa -3'
miRNA:   3'- cUGuAGC-UCAGCU--------GCGA-----ACCGGUGUG- -5'
18677 3' -54.2 NC_004682.1 + 8928 0.68 0.629532
Target:  5'- cGGCGUCGGGcCGGCGCUcGGaCuCAUAg -3'
miRNA:   3'- -CUGUAGCUCaGCUGCGAaCC-G-GUGUg -5'
18677 3' -54.2 NC_004682.1 + 142 0.68 0.618328
Target:  5'- cGGCA-CGGGcCGGCaCagGGCCACACa -3'
miRNA:   3'- -CUGUaGCUCaGCUGcGaaCCGGUGUG- -5'
18677 3' -54.2 NC_004682.1 + 1637 0.68 0.607137
Target:  5'- cGGCGUCG-GUCGACuCgaccuugaucgUGGCCACGg -3'
miRNA:   3'- -CUGUAGCuCAGCUGcGa----------ACCGGUGUg -5'
18677 3' -54.2 NC_004682.1 + 39885 0.68 0.607137
Target:  5'- aGGCAUCGGG-CGGCGC---GCUAUACg -3'
miRNA:   3'- -CUGUAGCUCaGCUGCGaacCGGUGUG- -5'
18677 3' -54.2 NC_004682.1 + 33711 0.69 0.551701
Target:  5'- cGGCAcCGGGuUCGACGCUccgUGGaucgucauCCACGCg -3'
miRNA:   3'- -CUGUaGCUC-AGCUGCGA---ACC--------GGUGUG- -5'
18677 3' -54.2 NC_004682.1 + 10616 0.69 0.551701
Target:  5'- -uUcgCGGGUgGGCGCgagUGGCCACu- -3'
miRNA:   3'- cuGuaGCUCAgCUGCGa--ACCGGUGug -5'
18677 3' -54.2 NC_004682.1 + 1538 0.7 0.497894
Target:  5'- cGACAUCG--UCGGgGCcgUGGCCACGa -3'
miRNA:   3'- -CUGUAGCucAGCUgCGa-ACCGGUGUg -5'
18677 3' -54.2 NC_004682.1 + 18244 0.7 0.486364
Target:  5'- aGGCAUCGAGgccgguaUCGACcugGCUgucgGuGCCGCGCa -3'
miRNA:   3'- -CUGUAGCUC-------AGCUG---CGAa---C-CGGUGUG- -5'
18677 3' -54.2 NC_004682.1 + 20193 0.71 0.45559
Target:  5'- aACGUgCGGGUCGACcgcacgacggaggGCUUcacGGCCACGCc -3'
miRNA:   3'- cUGUA-GCUCAGCUG-------------CGAA---CCGGUGUG- -5'
18677 3' -54.2 NC_004682.1 + 42585 0.71 0.440602
Target:  5'- uACAUCGAgcaccugauccgucuGuUCGACGCUgaggUGGCCGCAg -3'
miRNA:   3'- cUGUAGCU---------------C-AGCUGCGA----ACCGGUGUg -5'
18677 3' -54.2 NC_004682.1 + 39305 0.72 0.407698
Target:  5'- cGugGUCGuGGUCGACGCUgaGCCGCu- -3'
miRNA:   3'- -CugUAGC-UCAGCUGCGAacCGGUGug -5'
18677 3' -54.2 NC_004682.1 + 9044 1.09 0.001113
Target:  5'- cGACAUCGAGUCGACGCUUGGCCACACc -3'
miRNA:   3'- -CUGUAGCUCAGCUGCGAACCGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.