Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18677 | 5' | -54.4 | NC_004682.1 | + | 20286 | 0.66 | 0.716348 |
Target: 5'- -gGCGUGGCCGugaagcccuccGUCGUGCGgu-CGAc -3' miRNA: 3'- caCGUACCGGC-----------CAGCAUGUaguGCUa -5' |
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18677 | 5' | -54.4 | NC_004682.1 | + | 38561 | 0.66 | 0.705364 |
Target: 5'- -aGcCGUGGCCGGUCaccggccUGCGUCAUGu- -3' miRNA: 3'- caC-GUACCGGCCAGc------AUGUAGUGCua -5' |
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18677 | 5' | -54.4 | NC_004682.1 | + | 13507 | 0.66 | 0.683182 |
Target: 5'- gGUGCAaGGCCaGUCcgGUACGUCggcACGAc -3' miRNA: 3'- -CACGUaCCGGcCAG--CAUGUAG---UGCUa -5' |
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18677 | 5' | -54.4 | NC_004682.1 | + | 41336 | 0.67 | 0.649556 |
Target: 5'- cGUG-GUGGCCGGUCGgaccCGUC-CGGg -3' miRNA: 3'- -CACgUACCGGCCAGCau--GUAGuGCUa -5' |
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18677 | 5' | -54.4 | NC_004682.1 | + | 4566 | 0.68 | 0.592195 |
Target: 5'- -gGUGUGGCCcugcggccacccaGGUCGUGCucaacUCGCGAg -3' miRNA: 3'- caCGUACCGG-------------CCAGCAUGu----AGUGCUa -5' |
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18677 | 5' | -54.4 | NC_004682.1 | + | 5314 | 0.69 | 0.516232 |
Target: 5'- --uCGUGGCCGGUCuGggcgaugaACAUCGCGAUc -3' miRNA: 3'- cacGUACCGGCCAG-Ca-------UGUAGUGCUA- -5' |
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18677 | 5' | -54.4 | NC_004682.1 | + | 24011 | 0.7 | 0.453537 |
Target: 5'- -aGCAcucgGGCCGGUCGUuCAUCGucCGGUu -3' miRNA: 3'- caCGUa---CCGGCCAGCAuGUAGU--GCUA- -5' |
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18677 | 5' | -54.4 | NC_004682.1 | + | 9080 | 1.05 | 0.00191 |
Target: 5'- gGUGCAUGGCCGGUCGUACAUCACGAUc -3' miRNA: 3'- -CACGUACCGGCCAGCAUGUAGUGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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