miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18677 5' -54.4 NC_004682.1 + 20286 0.66 0.716348
Target:  5'- -gGCGUGGCCGugaagcccuccGUCGUGCGgu-CGAc -3'
miRNA:   3'- caCGUACCGGC-----------CAGCAUGUaguGCUa -5'
18677 5' -54.4 NC_004682.1 + 38561 0.66 0.705364
Target:  5'- -aGcCGUGGCCGGUCaccggccUGCGUCAUGu- -3'
miRNA:   3'- caC-GUACCGGCCAGc------AUGUAGUGCua -5'
18677 5' -54.4 NC_004682.1 + 13507 0.66 0.683182
Target:  5'- gGUGCAaGGCCaGUCcgGUACGUCggcACGAc -3'
miRNA:   3'- -CACGUaCCGGcCAG--CAUGUAG---UGCUa -5'
18677 5' -54.4 NC_004682.1 + 41336 0.67 0.649556
Target:  5'- cGUG-GUGGCCGGUCGgaccCGUC-CGGg -3'
miRNA:   3'- -CACgUACCGGCCAGCau--GUAGuGCUa -5'
18677 5' -54.4 NC_004682.1 + 4566 0.68 0.592195
Target:  5'- -gGUGUGGCCcugcggccacccaGGUCGUGCucaacUCGCGAg -3'
miRNA:   3'- caCGUACCGG-------------CCAGCAUGu----AGUGCUa -5'
18677 5' -54.4 NC_004682.1 + 5314 0.69 0.516232
Target:  5'- --uCGUGGCCGGUCuGggcgaugaACAUCGCGAUc -3'
miRNA:   3'- cacGUACCGGCCAG-Ca-------UGUAGUGCUA- -5'
18677 5' -54.4 NC_004682.1 + 24011 0.7 0.453537
Target:  5'- -aGCAcucgGGCCGGUCGUuCAUCGucCGGUu -3'
miRNA:   3'- caCGUa---CCGGCCAGCAuGUAGU--GCUA- -5'
18677 5' -54.4 NC_004682.1 + 9080 1.05 0.00191
Target:  5'- gGUGCAUGGCCGGUCGUACAUCACGAUc -3'
miRNA:   3'- -CACGUACCGGCCAGCAUGUAGUGCUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.