miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18678 3' -56.4 NC_004682.1 + 9434 1.1 0.000573
Target:  5'- gCUUCGCUCGGUCACCGACGCAGCUGCc -3'
miRNA:   3'- -GAAGCGAGCCAGUGGCUGCGUCGACG- -5'
18678 3' -56.4 NC_004682.1 + 46337 0.76 0.164449
Target:  5'- gUUCGCUCGGgCGCUGGCG-AGCUGa -3'
miRNA:   3'- gAAGCGAGCCaGUGGCUGCgUCGACg -5'
18678 3' -56.4 NC_004682.1 + 46201 0.76 0.183223
Target:  5'- -gUCGCUCGGcgCuGCCGACGCGGCc-- -3'
miRNA:   3'- gaAGCGAGCCa-G-UGGCUGCGUCGacg -5'
18678 3' -56.4 NC_004682.1 + 16814 0.73 0.251223
Target:  5'- -gUUGgUUGGUCACaggcgucuuCGugGCGGCUGCa -3'
miRNA:   3'- gaAGCgAGCCAGUG---------GCugCGUCGACG- -5'
18678 3' -56.4 NC_004682.1 + 32943 0.73 0.264398
Target:  5'- ---aGCUCGGUCaggACCGAC-CGGCUGg -3'
miRNA:   3'- gaagCGAGCCAG---UGGCUGcGUCGACg -5'
18678 3' -56.4 NC_004682.1 + 19980 0.7 0.399154
Target:  5'- --cCGCcgUCGGaUCGCCGACGaGGCUGa -3'
miRNA:   3'- gaaGCG--AGCC-AGUGGCUGCgUCGACg -5'
18678 3' -56.4 NC_004682.1 + 1403 0.69 0.476092
Target:  5'- -cUCGCU-GGUCcuCUGGCGCGGUcGCg -3'
miRNA:   3'- gaAGCGAgCCAGu-GGCUGCGUCGaCG- -5'
18678 3' -56.4 NC_004682.1 + 43733 0.69 0.476092
Target:  5'- -aUCGCUCG--CGCCGuCGUAGCgGCc -3'
miRNA:   3'- gaAGCGAGCcaGUGGCuGCGUCGaCG- -5'
18678 3' -56.4 NC_004682.1 + 23106 0.68 0.496467
Target:  5'- -aUCGgUgCGGUCGCCG-CGUGGC-GCa -3'
miRNA:   3'- gaAGCgA-GCCAGUGGCuGCGUCGaCG- -5'
18678 3' -56.4 NC_004682.1 + 22815 0.68 0.506802
Target:  5'- -cUCGCUCaGGUC-Ca---GCGGCUGCg -3'
miRNA:   3'- gaAGCGAG-CCAGuGgcugCGUCGACG- -5'
18678 3' -56.4 NC_004682.1 + 3117 0.68 0.527736
Target:  5'- -aUCGC-CGGuuacgggucgaUCACUGGCGCAGgCgGCg -3'
miRNA:   3'- gaAGCGaGCC-----------AGUGGCUGCGUC-GaCG- -5'
18678 3' -56.4 NC_004682.1 + 11981 0.68 0.527736
Target:  5'- --gCGCUCaagu-UCGACGCGGCUGCc -3'
miRNA:   3'- gaaGCGAGccaguGGCUGCGUCGACG- -5'
18678 3' -56.4 NC_004682.1 + 27547 0.68 0.538324
Target:  5'- -gUCGCUaCGGcggcgaCACUGGCGCuGCgGCa -3'
miRNA:   3'- gaAGCGA-GCCa-----GUGGCUGCGuCGaCG- -5'
18678 3' -56.4 NC_004682.1 + 5059 0.68 0.538324
Target:  5'- ---gGCUaCGcGUaCGCCGACGCcgcaccGGCUGCu -3'
miRNA:   3'- gaagCGA-GC-CA-GUGGCUGCG------UCGACG- -5'
18678 3' -56.4 NC_004682.1 + 1246 0.67 0.548984
Target:  5'- ---gGCggCGGUCACCcucggaGACGaggaGGCUGCu -3'
miRNA:   3'- gaagCGa-GCCAGUGG------CUGCg---UCGACG- -5'
18678 3' -56.4 NC_004682.1 + 8978 0.67 0.548984
Target:  5'- gCUUCgGCUCGG-CggggccgauaagGCCGACgaGCAGUUGUg -3'
miRNA:   3'- -GAAG-CGAGCCaG------------UGGCUG--CGUCGACG- -5'
18678 3' -56.4 NC_004682.1 + 27424 0.67 0.559709
Target:  5'- -aUCGCcgUCGGcgCACUGGCGUucucGCUGUc -3'
miRNA:   3'- gaAGCG--AGCCa-GUGGCUGCGu---CGACG- -5'
18678 3' -56.4 NC_004682.1 + 33892 0.67 0.570491
Target:  5'- cCUUCGCuUCGGcCccuGCCGACGacgaGGCccagGCg -3'
miRNA:   3'- -GAAGCG-AGCCaG---UGGCUGCg---UCGa---CG- -5'
18678 3' -56.4 NC_004682.1 + 35197 0.67 0.592197
Target:  5'- -aUCGCgcagugcgUGGUgGCCGGCGguG-UGCg -3'
miRNA:   3'- gaAGCGa-------GCCAgUGGCUGCguCgACG- -5'
18678 3' -56.4 NC_004682.1 + 46120 0.67 0.602012
Target:  5'- aCUUCGUggccgcgUCGGcagCGCCGAgCGaCAGCaGCa -3'
miRNA:   3'- -GAAGCG-------AGCCa--GUGGCU-GC-GUCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.