miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18679 3' -56.7 NC_004682.1 + 20574 0.66 0.645437
Target:  5'- --aGCCcucugGGCCAuGACGgUGUUCcaGACGCg -3'
miRNA:   3'- cucUGG-----CCGGU-CUGCgACAAG--CUGCG- -5'
18679 3' -56.7 NC_004682.1 + 6358 0.66 0.645437
Target:  5'- -cGACaCGGCgCGGGCGgUGcUCGACa- -3'
miRNA:   3'- cuCUG-GCCG-GUCUGCgACaAGCUGcg -5'
18679 3' -56.7 NC_004682.1 + 11958 0.66 0.623609
Target:  5'- cGGACCaagaucgccgaGGCaucGCGCUcaaGUUCGACGCg -3'
miRNA:   3'- cUCUGG-----------CCGgucUGCGA---CAAGCUGCG- -5'
18679 3' -56.7 NC_004682.1 + 10500 0.66 0.623609
Target:  5'- gGAGGCCGGU--GACGCagg-CGugGCc -3'
miRNA:   3'- -CUCUGGCCGguCUGCGacaaGCugCG- -5'
18679 3' -56.7 NC_004682.1 + 30320 0.66 0.612701
Target:  5'- -uGACCGGggAGGCGCUGaucCGGCuGCa -3'
miRNA:   3'- cuCUGGCCggUCUGCGACaa-GCUG-CG- -5'
18679 3' -56.7 NC_004682.1 + 32733 0.67 0.584441
Target:  5'- cAGACCGGCCucggcguagaugguGACGa-GUUCGuCGUa -3'
miRNA:   3'- cUCUGGCCGGu-------------CUGCgaCAAGCuGCG- -5'
18679 3' -56.7 NC_004682.1 + 37726 0.67 0.580114
Target:  5'- -cGACgGGCUccucguAGAUGCgc-UCGACGCa -3'
miRNA:   3'- cuCUGgCCGG------UCUGCGacaAGCUGCG- -5'
18679 3' -56.7 NC_004682.1 + 4552 0.67 0.569324
Target:  5'- gGAGACCGGCUGGugGUg---UGGCccuGCg -3'
miRNA:   3'- -CUCUGGCCGGUCugCGacaaGCUG---CG- -5'
18679 3' -56.7 NC_004682.1 + 22151 0.67 0.557515
Target:  5'- gGAGAUCGGCUaccgagagccgcaGGACcccguucugaaGCUGUUCGA-GCu -3'
miRNA:   3'- -CUCUGGCCGG-------------UCUG-----------CGACAAGCUgCG- -5'
18679 3' -56.7 NC_004682.1 + 13850 0.67 0.547905
Target:  5'- cGAGGCCaaccuGGCaCAGGCccGCgcaUCGACGCg -3'
miRNA:   3'- -CUCUGG-----CCG-GUCUG--CGacaAGCUGCG- -5'
18679 3' -56.7 NC_004682.1 + 30697 0.67 0.547905
Target:  5'- -cGACCGGacgaugauCCAGGCGUUcaaGgaCGGCGCg -3'
miRNA:   3'- cuCUGGCC--------GGUCUGCGA---CaaGCUGCG- -5'
18679 3' -56.7 NC_004682.1 + 20395 0.68 0.526746
Target:  5'- cGGGACCGGguuguggaaCCGGACGCcGUUCaucCGUg -3'
miRNA:   3'- -CUCUGGCC---------GGUCUGCGaCAAGcu-GCG- -5'
18679 3' -56.7 NC_004682.1 + 15779 0.68 0.516281
Target:  5'- gGAGcuACCGGUCGGcuCGCgGUUCuACGCa -3'
miRNA:   3'- -CUC--UGGCCGGUCu-GCGaCAAGcUGCG- -5'
18679 3' -56.7 NC_004682.1 + 24186 0.68 0.516281
Target:  5'- --cGCUGGCgAGACGCUGacCGACu- -3'
miRNA:   3'- cucUGGCCGgUCUGCGACaaGCUGcg -5'
18679 3' -56.7 NC_004682.1 + 43455 0.68 0.5059
Target:  5'- uAGGucUCGGCCAGggcaACGCUGUa-GACGCc -3'
miRNA:   3'- cUCU--GGCCGGUC----UGCGACAagCUGCG- -5'
18679 3' -56.7 NC_004682.1 + 38279 0.68 0.485416
Target:  5'- cAGAgCaGCUc-GCGCUGUUCGACGUa -3'
miRNA:   3'- cUCUgGcCGGucUGCGACAAGCUGCG- -5'
18679 3' -56.7 NC_004682.1 + 17683 0.68 0.475323
Target:  5'- -uGAUCGGCaC-GACGCUGaccaCGGCGCu -3'
miRNA:   3'- cuCUGGCCG-GuCUGCGACaa--GCUGCG- -5'
18679 3' -56.7 NC_004682.1 + 8859 0.68 0.475323
Target:  5'- cGAGcGCCGGCCcGACGCcGUa-GGCGUc -3'
miRNA:   3'- -CUC-UGGCCGGuCUGCGaCAagCUGCG- -5'
18679 3' -56.7 NC_004682.1 + 25914 0.69 0.445695
Target:  5'- -uGACCcaGCCAGACGCa---CGGCGCg -3'
miRNA:   3'- cuCUGGc-CGGUCUGCGacaaGCUGCG- -5'
18679 3' -56.7 NC_004682.1 + 14761 0.69 0.445695
Target:  5'- -cGugUGGCC-GAUGCUGUcccagccggUCGGCGUc -3'
miRNA:   3'- cuCugGCCGGuCUGCGACA---------AGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.