miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18679 5' -56.3 NC_004682.1 + 34705 0.66 0.676205
Target:  5'- aUCGCAaCC-GGCGcaucggCGuGGGCCACc -3'
miRNA:   3'- -AGCGUaGGaCCGCaa----GCuCCUGGUGc -5'
18679 5' -56.3 NC_004682.1 + 48608 0.66 0.676205
Target:  5'- -gGCAccgCgUGGCGUUCGGGaACUGCGc -3'
miRNA:   3'- agCGUa--GgACCGCAAGCUCcUGGUGC- -5'
18679 5' -56.3 NC_004682.1 + 30685 0.66 0.665345
Target:  5'- ---gAUCCaGGCGUUCaAGGACgGCGc -3'
miRNA:   3'- agcgUAGGaCCGCAAGcUCCUGgUGC- -5'
18679 5' -56.3 NC_004682.1 + 8760 0.66 0.662081
Target:  5'- gCGCuuacucaucaggaaGUCCUGucucGCGccgaacgCGAGGACCGCGc -3'
miRNA:   3'- aGCG--------------UAGGAC----CGCaa-----GCUCCUGGUGC- -5'
18679 5' -56.3 NC_004682.1 + 10608 0.66 0.654454
Target:  5'- cCGCAUCauucgcgGGUGggcgCGAGuGGCCACu -3'
miRNA:   3'- aGCGUAGga-----CCGCaa--GCUC-CUGGUGc -5'
18679 5' -56.3 NC_004682.1 + 32395 0.66 0.643543
Target:  5'- gUCGC-UCC-GGCGgUCGAGGAggacaCCAgCGg -3'
miRNA:   3'- -AGCGuAGGaCCGCaAGCUCCU-----GGU-GC- -5'
18679 5' -56.3 NC_004682.1 + 32827 0.66 0.632621
Target:  5'- cCGCGUCCcGGCGcgUCGAucagauccuuGACCGCu -3'
miRNA:   3'- aGCGUAGGaCCGCa-AGCUc---------CUGGUGc -5'
18679 5' -56.3 NC_004682.1 + 21219 0.67 0.610786
Target:  5'- gCGCGUCCUGgaGCGUcuUCuuGG-CCACGu -3'
miRNA:   3'- aGCGUAGGAC--CGCA--AGcuCCuGGUGC- -5'
18679 5' -56.3 NC_004682.1 + 12881 0.67 0.589024
Target:  5'- cCGC-UCgCUGGCGgcgUCGggGGGAUCGCu -3'
miRNA:   3'- aGCGuAG-GACCGCa--AGC--UCCUGGUGc -5'
18679 5' -56.3 NC_004682.1 + 30251 0.67 0.578192
Target:  5'- aCGagAUCCUGGCGUcggugccCGAGGACaagGCGc -3'
miRNA:   3'- aGCg-UAGGACCGCAa------GCUCCUGg--UGC- -5'
18679 5' -56.3 NC_004682.1 + 29317 0.67 0.578192
Target:  5'- -gGUcUCCUGGUGgUCGGugccgacguGGACCGCGu -3'
miRNA:   3'- agCGuAGGACCGCaAGCU---------CCUGGUGC- -5'
18679 5' -56.3 NC_004682.1 + 36498 0.67 0.567403
Target:  5'- cUCGCAgcgCCUccagagccgcacGGaggUCGAGGACCGCc -3'
miRNA:   3'- -AGCGUa--GGA------------CCgcaAGCUCCUGGUGc -5'
18679 5' -56.3 NC_004682.1 + 45025 0.67 0.567403
Target:  5'- aUCGacuGUcCCUGGCGguggUUGAGGACCu-- -3'
miRNA:   3'- -AGCg--UA-GGACCGCa---AGCUCCUGGugc -5'
18679 5' -56.3 NC_004682.1 + 6515 0.69 0.493732
Target:  5'- -aGCucCCUGGCaccGUccaugaUCGAGGACCACa -3'
miRNA:   3'- agCGuaGGACCG---CA------AGCUCCUGGUGc -5'
18679 5' -56.3 NC_004682.1 + 10010 0.69 0.489647
Target:  5'- gUCGCugcgucugCCUGGCGgcguacgucggcgUCGAcGGAUCGCGc -3'
miRNA:   3'- -AGCGua------GGACCGCa------------AGCU-CCUGGUGC- -5'
18679 5' -56.3 NC_004682.1 + 2024 0.69 0.453631
Target:  5'- gCGCAcccgUCCagGGUG-UCGAGGGuCCACGc -3'
miRNA:   3'- aGCGU----AGGa-CCGCaAGCUCCU-GGUGC- -5'
18679 5' -56.3 NC_004682.1 + 47364 0.7 0.419102
Target:  5'- cCGCuaGUCCUGGCGcuggcCGAGGAgauccgaggcuugccCCGCGa -3'
miRNA:   3'- aGCG--UAGGACCGCaa---GCUCCU---------------GGUGC- -5'
18679 5' -56.3 NC_004682.1 + 23711 0.7 0.415365
Target:  5'- uUCGgGUCgCUGGCGacCGAGGuCCAUc -3'
miRNA:   3'- -AGCgUAG-GACCGCaaGCUCCuGGUGc -5'
18679 5' -56.3 NC_004682.1 + 46419 0.7 0.406111
Target:  5'- cUCGCA-CCcGGCGggcUCG-GGGCCGCa -3'
miRNA:   3'- -AGCGUaGGaCCGCa--AGCuCCUGGUGc -5'
18679 5' -56.3 NC_004682.1 + 30781 0.7 0.396988
Target:  5'- gUGCuUCCUGGCcgaCGAGGGCCAa- -3'
miRNA:   3'- aGCGuAGGACCGcaaGCUCCUGGUgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.