Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18680 | 5' | -61.1 | NC_004682.1 | + | 9759 | 1.08 | 0.000313 |
Target: 5'- gAGGCCAUCCGGUCCUCGGAGAGCCGAc -3' miRNA: 3'- -UCCGGUAGGCCAGGAGCCUCUCGGCU- -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 428 | 0.74 | 0.116852 |
Target: 5'- gGGaGCCGcuugggggCGGcUCCUCGGAGGGCCGAg -3' miRNA: 3'- -UC-CGGUag------GCC-AGGAGCCUCUCGGCU- -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 13512 | 0.74 | 0.123358 |
Target: 5'- aAGGCCAgUCCGGUaCgUCGGcacgacGGGCCGAg -3' miRNA: 3'- -UCCGGU-AGGCCA-GgAGCCu-----CUCGGCU- -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 2076 | 0.71 | 0.17907 |
Target: 5'- -cGCCGU-CGG-CCUCGGGGGGCCa- -3' miRNA: 3'- ucCGGUAgGCCaGGAGCCUCUCGGcu -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 40885 | 0.71 | 0.193612 |
Target: 5'- uGGUCGUCCacGGUggCgCUCGGGGGGCUGAc -3' miRNA: 3'- uCCGGUAGG--CCA--G-GAGCCUCUCGGCU- -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 18763 | 0.7 | 0.231597 |
Target: 5'- cGGUCGUCUGGUUCUucuccaucUGGAGAcGCUGAc -3' miRNA: 3'- uCCGGUAGGCCAGGA--------GCCUCU-CGGCU- -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 22186 | 0.7 | 0.23751 |
Target: 5'- cGGGCCGUCCuuGUCCcagCGGu-AGCCGAu -3' miRNA: 3'- -UCCGGUAGGc-CAGGa--GCCucUCGGCU- -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 42175 | 0.69 | 0.275673 |
Target: 5'- gAGGCCgcGUCCuGcUCCUCGGugAGGGCCu- -3' miRNA: 3'- -UCCGG--UAGGcC-AGGAGCC--UCUCGGcu -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 27928 | 0.68 | 0.311096 |
Target: 5'- uGGCCuucgggCUGGUCC--GGGGGGCCGu -3' miRNA: 3'- uCCGGua----GGCCAGGagCCUCUCGGCu -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 23982 | 0.67 | 0.326204 |
Target: 5'- cGGCag-CCGcGUCCUgGGGGuguGGCCGGu -3' miRNA: 3'- uCCGguaGGC-CAGGAgCCUC---UCGGCU- -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 40013 | 0.67 | 0.33396 |
Target: 5'- gAGGCCGa--GGcCCUCGGuG-GCCGAc -3' miRNA: 3'- -UCCGGUaggCCaGGAGCCuCuCGGCU- -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 6980 | 0.67 | 0.34185 |
Target: 5'- aGGGCCAUUgCGauGcCCUCGGuGAGCgGAc -3' miRNA: 3'- -UCCGGUAG-GC--CaGGAGCCuCUCGgCU- -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 31817 | 0.67 | 0.349874 |
Target: 5'- cGGGCuCAUCUGGgcuUCCUCGGAcuggacacgGAGaCGAc -3' miRNA: 3'- -UCCG-GUAGGCC---AGGAGCCU---------CUCgGCU- -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 28703 | 0.67 | 0.349874 |
Target: 5'- aAGGCCggcacuggaccgGUUCGGUCUUCcucuacggGGGGAgGCCGGa -3' miRNA: 3'- -UCCGG------------UAGGCCAGGAG--------CCUCU-CGGCU- -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 40754 | 0.67 | 0.365485 |
Target: 5'- gGGGUCAUCCgcaaccagaagauGGUcgaCCUCGGA--GCCGAu -3' miRNA: 3'- -UCCGGUAGG-------------CCA---GGAGCCUcuCGGCU- -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 19799 | 0.67 | 0.36632 |
Target: 5'- cGGCuCAgCgGGcUCCUCGGuGGAGCCa- -3' miRNA: 3'- uCCG-GUaGgCC-AGGAGCC-UCUCGGcu -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 5221 | 0.66 | 0.374741 |
Target: 5'- cGGGCCu--UGG-CCUCGGAGAuGCCc- -3' miRNA: 3'- -UCCGGuagGCCaGGAGCCUCU-CGGcu -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 47609 | 0.66 | 0.374741 |
Target: 5'- uGGCgA-CCGG-CCUCGGAGAccuuGCCu- -3' miRNA: 3'- uCCGgUaGGCCaGGAGCCUCU----CGGcu -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 530 | 0.66 | 0.391971 |
Target: 5'- gAGGCCGcuggauaCCGGcCCU-GGAG-GCCGGu -3' miRNA: 3'- -UCCGGUa------GGCCaGGAgCCUCuCGGCU- -5' |
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18680 | 5' | -61.1 | NC_004682.1 | + | 1938 | 0.66 | 0.400777 |
Target: 5'- aGGGCCuUgCGGcCCgauggggcCGGGGAGcCCGAg -3' miRNA: 3'- -UCCGGuAgGCCaGGa-------GCCUCUC-GGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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