miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 3' -59.1 NC_004682.1 + 29320 0.66 0.538712
Target:  5'- cUCCuggugGUCGGUGCCGACGUGgaCCGCg -3'
miRNA:   3'- uAGG-----CAGCUGCGGCUGCAUgcGGCGg -5'
18681 3' -59.1 NC_004682.1 + 19978 0.66 0.538712
Target:  5'- -gCCGUCGGauCGCCGACG-AgGCUGaUCu -3'
miRNA:   3'- uaGGCAGCU--GCGGCUGCaUgCGGC-GG- -5'
18681 3' -59.1 NC_004682.1 + 677 0.66 0.518168
Target:  5'- cAUCCGUCGugGUgaCGACcauucACG-CGCCa -3'
miRNA:   3'- -UAGGCAGCugCG--GCUGca---UGCgGCGG- -5'
18681 3' -59.1 NC_004682.1 + 15917 0.66 0.518168
Target:  5'- uUCCaaGUCGAaGCCGAa----GCCGCCa -3'
miRNA:   3'- uAGG--CAGCUgCGGCUgcaugCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 26458 0.66 0.518168
Target:  5'- -aCCGUCG-UGCCGAUcuUGCucCCGCCa -3'
miRNA:   3'- uaGGCAGCuGCGGCUGc-AUGc-GGCGG- -5'
18681 3' -59.1 NC_004682.1 + 16276 0.66 0.518168
Target:  5'- -aCCGUCGAUGugaacaccgaCCGGCGUGCaGCCcagacGCUc -3'
miRNA:   3'- uaGGCAGCUGC----------GGCUGCAUG-CGG-----CGG- -5'
18681 3' -59.1 NC_004682.1 + 3234 0.66 0.518168
Target:  5'- -cCCGcCGugGUgcccgaguUGGCGgcugcUGCGCCGCCu -3'
miRNA:   3'- uaGGCaGCugCG--------GCUGC-----AUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 17685 0.66 0.508013
Target:  5'- -aUCGgcaCGACGCUGACcacgGCGCUGCa -3'
miRNA:   3'- uaGGCa--GCUGCGGCUGca--UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 38105 0.66 0.507003
Target:  5'- -gCUGUCGGCGCUGAggcaccucggcacCGaggagGCGCUGUCg -3'
miRNA:   3'- uaGGCAGCUGCGGCU-------------GCa----UGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 2110 0.66 0.497944
Target:  5'- aGUCCG-CGugGacccuCGACacccuggacggGUGCGCCGUCg -3'
miRNA:   3'- -UAGGCaGCugCg----GCUG-----------CAUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 18961 0.66 0.496941
Target:  5'- gAUCCGUUGugGCCcuGGCGaagucguagggcaUACgaGCCGUCu -3'
miRNA:   3'- -UAGGCAGCugCGG--CUGC-------------AUG--CGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 39339 0.67 0.487964
Target:  5'- -gCCGUUGGCG-CGGCGgcaGCCGUa -3'
miRNA:   3'- uaGGCAGCUGCgGCUGCaugCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 44716 0.67 0.487964
Target:  5'- uUCuCGUCGGgcaUGCCGACGc-CGCCggugGCCa -3'
miRNA:   3'- uAG-GCAGCU---GCGGCUGCauGCGG----CGG- -5'
18681 3' -59.1 NC_004682.1 + 49800 0.67 0.487964
Target:  5'- -cCUGUCGcguucccucACGCCGACGUGuguuuccacCGCuCGUCa -3'
miRNA:   3'- uaGGCAGC---------UGCGGCUGCAU---------GCG-GCGG- -5'
18681 3' -59.1 NC_004682.1 + 49316 0.67 0.487964
Target:  5'- cGUgCGUUGACGCUGAUcacuuuGUG-GUCGCCg -3'
miRNA:   3'- -UAgGCAGCUGCGGCUG------CAUgCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 32949 0.67 0.47808
Target:  5'- --aCGUCGAC-CCGACGgagcuggGCGuccacgaaCCGCCa -3'
miRNA:   3'- uagGCAGCUGcGGCUGCa------UGC--------GGCGG- -5'
18681 3' -59.1 NC_004682.1 + 5957 0.67 0.47808
Target:  5'- -gCCGUCGcgagcaacGCGCuCGACGUACuCaacaGCCa -3'
miRNA:   3'- uaGGCAGC--------UGCG-GCUGCAUGcGg---CGG- -5'
18681 3' -59.1 NC_004682.1 + 26008 0.67 0.468295
Target:  5'- -gCCGUCgcgauGAgGCCGGCGU-CGgacucCCGCCg -3'
miRNA:   3'- uaGGCAG-----CUgCGGCUGCAuGC-----GGCGG- -5'
18681 3' -59.1 NC_004682.1 + 9108 0.67 0.458614
Target:  5'- -gUCGacUCGAUGUCGAgguCGUugGCCuGCCa -3'
miRNA:   3'- uaGGC--AGCUGCGGCU---GCAugCGG-CGG- -5'
18681 3' -59.1 NC_004682.1 + 27525 0.67 0.458614
Target:  5'- uGUCa-UCGACGgCGGCGUGauaGUCGCUa -3'
miRNA:   3'- -UAGgcAGCUGCgGCUGCAUg--CGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.