Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 9918 | 1.1 | 0.00039 |
Target: 5'- gAUCCGUCGACGCCGACGUACGCCGCCa -3' miRNA: 3'- -UAGGCAGCUGCGGCUGCAUGCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 6207 | 0.78 | 0.094121 |
Target: 5'- -gCCGUCGuACGCCuuGGCGUAgGCCGCg -3' miRNA: 3'- uaGGCAGC-UGCGG--CUGCAUgCGGCGg -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 5137 | 0.78 | 0.09156 |
Target: 5'- -gCCGgugCGGCGUCGGCGUACGCguaGCCc -3' miRNA: 3'- uaGGCa--GCUGCGGCUGCAUGCGg--CGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 32883 | 0.76 | 0.120417 |
Target: 5'- cUCCGUCGG-GUCGACGUaACGCUGCg -3' miRNA: 3'- uAGGCAGCUgCGGCUGCA-UGCGGCGg -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 27427 | 0.75 | 0.145436 |
Target: 5'- -gCCGUCGGCGCacuGGCGUucuCGCUGUCg -3' miRNA: 3'- uaGGCAGCUGCGg--CUGCAu--GCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 42567 | 0.74 | 0.179771 |
Target: 5'- cGUCUGuUCGACGCUGAgGUG-GCCGCa -3' miRNA: 3'- -UAGGC-AGCUGCGGCUgCAUgCGGCGg -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 9986 | 0.73 | 0.194404 |
Target: 5'- --aCGUCGGCGUCGACGgauCG-CGCCa -3' miRNA: 3'- uagGCAGCUGCGGCUGCau-GCgGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 3312 | 0.73 | 0.210068 |
Target: 5'- -cCUG-CGcCGCCGAUGUcgcccugugccGCGCCGCCg -3' miRNA: 3'- uaGGCaGCuGCGGCUGCA-----------UGCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 45491 | 0.72 | 0.215526 |
Target: 5'- --gCGUUGAUGCCuccgugcucagcGAUGUGCGCCGCa -3' miRNA: 3'- uagGCAGCUGCGG------------CUGCAUGCGGCGg -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 6189 | 0.72 | 0.234999 |
Target: 5'- --aCGaCGACGCUGACGUucagcgcgaguacgaACGCCGCa -3' miRNA: 3'- uagGCaGCUGCGGCUGCA---------------UGCGGCGg -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 490 | 0.72 | 0.232634 |
Target: 5'- uUCCGgCGGCGCucacCGAC--GCGCCGCCc -3' miRNA: 3'- uAGGCaGCUGCG----GCUGcaUGCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 28281 | 0.71 | 0.25087 |
Target: 5'- -gCUGUCGAaaGCUGAUcgACGCCGCCg -3' miRNA: 3'- uaGGCAGCUg-CGGCUGcaUGCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 14797 | 0.71 | 0.283862 |
Target: 5'- -aCCGUCGAaGCCGAacuCGggcAUGUCGCCa -3' miRNA: 3'- uaGGCAGCUgCGGCU---GCa--UGCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 35190 | 0.71 | 0.257206 |
Target: 5'- aGUgCGUgGugGCCGGCGgugUGCGCCGgUCa -3' miRNA: 3'- -UAgGCAgCugCGGCUGC---AUGCGGC-GG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 12072 | 0.71 | 0.257206 |
Target: 5'- -cUUGUCGAUGCCGugGaugGCaGCCGCg -3' miRNA: 3'- uaGGCAGCUGCGGCugCa--UG-CGGCGg -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 3069 | 0.7 | 0.291565 |
Target: 5'- --aUGUCGACGCCgcgucggaggguGACGgaguuccacugcccaGCGCCGCCg -3' miRNA: 3'- uagGCAGCUGCGG------------CUGCa--------------UGCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 17666 | 0.7 | 0.290858 |
Target: 5'- uGUCCG-CGAgcguggugaaCGCUGGCGUgaGCGCCGUg -3' miRNA: 3'- -UAGGCaGCU----------GCGGCUGCA--UGCGGCGg -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 47197 | 0.7 | 0.312655 |
Target: 5'- cAUCCGcauccUCGACGCCugagccaucacuGAC-UACGCCGUCc -3' miRNA: 3'- -UAGGC-----AGCUGCGG------------CUGcAUGCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 47176 | 0.7 | 0.312655 |
Target: 5'- cUCCGUCGGugccgccuCGUCGGCGguacucacggUugGCUGCCu -3' miRNA: 3'- uAGGCAGCU--------GCGGCUGC----------AugCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 10184 | 0.69 | 0.335668 |
Target: 5'- -gCUGcgUGACGuuGGaagaGUACGCCGCCc -3' miRNA: 3'- uaGGCa-GCUGCggCUg---CAUGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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