miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 3' -59.1 NC_004682.1 + 9918 1.1 0.00039
Target:  5'- gAUCCGUCGACGCCGACGUACGCCGCCa -3'
miRNA:   3'- -UAGGCAGCUGCGGCUGCAUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 5137 0.78 0.09156
Target:  5'- -gCCGgugCGGCGUCGGCGUACGCguaGCCc -3'
miRNA:   3'- uaGGCa--GCUGCGGCUGCAUGCGg--CGG- -5'
18681 3' -59.1 NC_004682.1 + 6207 0.78 0.094121
Target:  5'- -gCCGUCGuACGCCuuGGCGUAgGCCGCg -3'
miRNA:   3'- uaGGCAGC-UGCGG--CUGCAUgCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 32883 0.76 0.120417
Target:  5'- cUCCGUCGG-GUCGACGUaACGCUGCg -3'
miRNA:   3'- uAGGCAGCUgCGGCUGCA-UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 27427 0.75 0.145436
Target:  5'- -gCCGUCGGCGCacuGGCGUucuCGCUGUCg -3'
miRNA:   3'- uaGGCAGCUGCGg--CUGCAu--GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 42567 0.74 0.179771
Target:  5'- cGUCUGuUCGACGCUGAgGUG-GCCGCa -3'
miRNA:   3'- -UAGGC-AGCUGCGGCUgCAUgCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 9986 0.73 0.194404
Target:  5'- --aCGUCGGCGUCGACGgauCG-CGCCa -3'
miRNA:   3'- uagGCAGCUGCGGCUGCau-GCgGCGG- -5'
18681 3' -59.1 NC_004682.1 + 3312 0.73 0.210068
Target:  5'- -cCUG-CGcCGCCGAUGUcgcccugugccGCGCCGCCg -3'
miRNA:   3'- uaGGCaGCuGCGGCUGCA-----------UGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 45491 0.72 0.215526
Target:  5'- --gCGUUGAUGCCuccgugcucagcGAUGUGCGCCGCa -3'
miRNA:   3'- uagGCAGCUGCGG------------CUGCAUGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 490 0.72 0.232634
Target:  5'- uUCCGgCGGCGCucacCGAC--GCGCCGCCc -3'
miRNA:   3'- uAGGCaGCUGCG----GCUGcaUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 6189 0.72 0.234999
Target:  5'- --aCGaCGACGCUGACGUucagcgcgaguacgaACGCCGCa -3'
miRNA:   3'- uagGCaGCUGCGGCUGCA---------------UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 28281 0.71 0.25087
Target:  5'- -gCUGUCGAaaGCUGAUcgACGCCGCCg -3'
miRNA:   3'- uaGGCAGCUg-CGGCUGcaUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 12072 0.71 0.257206
Target:  5'- -cUUGUCGAUGCCGugGaugGCaGCCGCg -3'
miRNA:   3'- uaGGCAGCUGCGGCugCa--UG-CGGCGg -5'
18681 3' -59.1 NC_004682.1 + 35190 0.71 0.257206
Target:  5'- aGUgCGUgGugGCCGGCGgugUGCGCCGgUCa -3'
miRNA:   3'- -UAgGCAgCugCGGCUGC---AUGCGGC-GG- -5'
18681 3' -59.1 NC_004682.1 + 14797 0.71 0.283862
Target:  5'- -aCCGUCGAaGCCGAacuCGggcAUGUCGCCa -3'
miRNA:   3'- uaGGCAGCUgCGGCU---GCa--UGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 17666 0.7 0.290858
Target:  5'- uGUCCG-CGAgcguggugaaCGCUGGCGUgaGCGCCGUg -3'
miRNA:   3'- -UAGGCaGCU----------GCGGCUGCA--UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 3069 0.7 0.291565
Target:  5'- --aUGUCGACGCCgcgucggaggguGACGgaguuccacugcccaGCGCCGCCg -3'
miRNA:   3'- uagGCAGCUGCGG------------CUGCa--------------UGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 47197 0.7 0.312655
Target:  5'- cAUCCGcauccUCGACGCCugagccaucacuGAC-UACGCCGUCc -3'
miRNA:   3'- -UAGGC-----AGCUGCGG------------CUGcAUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 47176 0.7 0.312655
Target:  5'- cUCCGUCGGugccgccuCGUCGGCGguacucacggUugGCUGCCu -3'
miRNA:   3'- uAGGCAGCU--------GCGGCUGC----------AugCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 10184 0.69 0.335668
Target:  5'- -gCUGcgUGACGuuGGaagaGUACGCCGCCc -3'
miRNA:   3'- uaGGCa-GCUGCggCUg---CAUGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.