Results 21 - 40 of 58 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 43591 | 0.69 | 0.341213 |
Target: 5'- cUCCGUCGAgGUCGAUGUcgaaacccagcucgAUGCCugggguGCCg -3' miRNA: 3'- uAGGCAGCUgCGGCUGCA--------------UGCGG------CGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 29334 | 0.69 | 0.351685 |
Target: 5'- ---gGcCGAUGCCGACuucauCGCCGCCg -3' miRNA: 3'- uaggCaGCUGCGGCUGcau--GCGGCGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 13591 | 0.69 | 0.359895 |
Target: 5'- -cCCGUCG-UGCCGACGUACcggacUgGCCu -3' miRNA: 3'- uaGGCAGCuGCGGCUGCAUGc----GgCGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 3384 | 0.69 | 0.362383 |
Target: 5'- gAUCCGUUGGCaccagcgccgccgcuGCCGAaggugaaCGUAuggcuggcacCGCCGCCa -3' miRNA: 3'- -UAGGCAGCUG---------------CGGCU-------GCAU----------GCGGCGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 15341 | 0.69 | 0.376711 |
Target: 5'- --gCGaCGACGCCGuCGUGCuCCGCa -3' miRNA: 3'- uagGCaGCUGCGGCuGCAUGcGGCGg -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 38818 | 0.69 | 0.376711 |
Target: 5'- -aCUGUCGggaaggcuGCGCCGGuauCGUuccguCGCCGCCc -3' miRNA: 3'- uaGGCAGC--------UGCGGCU---GCAu----GCGGCGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 34762 | 0.68 | 0.385315 |
Target: 5'- -gCCGUUGcCGUgcGCGaACGCCGCCa -3' miRNA: 3'- uaGGCAGCuGCGgcUGCaUGCGGCGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 27615 | 0.68 | 0.385315 |
Target: 5'- --gUGUCGcCGCCGuaGCGacuaucACGCCGCCg -3' miRNA: 3'- uagGCAGCuGCGGC--UGCa-----UGCGGCGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 7116 | 0.68 | 0.394048 |
Target: 5'- -aCUGUCGACGgCGGCugGUAC-CUGCCc -3' miRNA: 3'- uaGGCAGCUGCgGCUG--CAUGcGGCGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 39306 | 0.68 | 0.394048 |
Target: 5'- -gUgGUCGugGUCGACGcugaGCCGCUu -3' miRNA: 3'- uaGgCAGCugCGGCUGCaug-CGGCGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 47472 | 0.68 | 0.402909 |
Target: 5'- -cCUGUcCGACGaaGGCGUcauCGCCGUCa -3' miRNA: 3'- uaGGCA-GCUGCggCUGCAu--GCGGCGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 14586 | 0.68 | 0.402909 |
Target: 5'- -gCCGUCGGCuaCG-UGUACaCCGCCc -3' miRNA: 3'- uaGGCAGCUGcgGCuGCAUGcGGCGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 4765 | 0.68 | 0.402909 |
Target: 5'- -cCUGcUCGAUcagGCCGACGUAgucggUGCCGUCg -3' miRNA: 3'- uaGGC-AGCUG---CGGCUGCAU-----GCGGCGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 46201 | 0.68 | 0.402909 |
Target: 5'- -gUCGcUCGGCGCUGcCG-ACGCgGCCa -3' miRNA: 3'- uaGGC-AGCUGCGGCuGCaUGCGgCGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 8855 | 0.68 | 0.411894 |
Target: 5'- aGUCCGa--GCGCCGGCccgACGCCGUa -3' miRNA: 3'- -UAGGCagcUGCGGCUGca-UGCGGCGg -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 13774 | 0.68 | 0.421003 |
Target: 5'- ---aGUCGAUGCgGGCgGUGCGCCGa- -3' miRNA: 3'- uaggCAGCUGCGgCUG-CAUGCGGCgg -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 12957 | 0.67 | 0.439579 |
Target: 5'- uGUCaCGUCgGACGCCGuuGCGUACGgcaUGUCu -3' miRNA: 3'- -UAG-GCAG-CUGCGGC--UGCAUGCg--GCGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 1806 | 0.67 | 0.458614 |
Target: 5'- -gCCgGUCGGCguGCCGACGUAgGaCagaGCCg -3' miRNA: 3'- uaGG-CAGCUG--CGGCUGCAUgC-Gg--CGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 9108 | 0.67 | 0.458614 |
Target: 5'- -gUCGacUCGAUGUCGAgguCGUugGCCuGCCa -3' miRNA: 3'- uaGGC--AGCUGCGGCU---GCAugCGG-CGG- -5' |
|||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 27525 | 0.67 | 0.458614 |
Target: 5'- uGUCa-UCGACGgCGGCGUGauaGUCGCUa -3' miRNA: 3'- -UAGgcAGCUGCgGCUGCAUg--CGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home