miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 3' -59.1 NC_004682.1 + 490 0.72 0.232634
Target:  5'- uUCCGgCGGCGCucacCGAC--GCGCCGCCc -3'
miRNA:   3'- uAGGCaGCUGCG----GCUGcaUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 677 0.66 0.518168
Target:  5'- cAUCCGUCGugGUgaCGACcauucACG-CGCCa -3'
miRNA:   3'- -UAGGCAGCugCG--GCUGca---UGCgGCGG- -5'
18681 3' -59.1 NC_004682.1 + 1806 0.67 0.458614
Target:  5'- -gCCgGUCGGCguGCCGACGUAgGaCagaGCCg -3'
miRNA:   3'- uaGG-CAGCUG--CGGCUGCAUgC-Gg--CGG- -5'
18681 3' -59.1 NC_004682.1 + 2110 0.66 0.497944
Target:  5'- aGUCCG-CGugGacccuCGACacccuggacggGUGCGCCGUCg -3'
miRNA:   3'- -UAGGCaGCugCg----GCUG-----------CAUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 3069 0.7 0.291565
Target:  5'- --aUGUCGACGCCgcgucggaggguGACGgaguuccacugcccaGCGCCGCCg -3'
miRNA:   3'- uagGCAGCUGCGG------------CUGCa--------------UGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 3234 0.66 0.518168
Target:  5'- -cCCGcCGugGUgcccgaguUGGCGgcugcUGCGCCGCCu -3'
miRNA:   3'- uaGGCaGCugCG--------GCUGC-----AUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 3312 0.73 0.210068
Target:  5'- -cCUG-CGcCGCCGAUGUcgcccugugccGCGCCGCCg -3'
miRNA:   3'- uaGGCaGCuGCGGCUGCA-----------UGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 3384 0.69 0.362383
Target:  5'- gAUCCGUUGGCaccagcgccgccgcuGCCGAaggugaaCGUAuggcuggcacCGCCGCCa -3'
miRNA:   3'- -UAGGCAGCUG---------------CGGCU-------GCAU----------GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 4765 0.68 0.402909
Target:  5'- -cCUGcUCGAUcagGCCGACGUAgucggUGCCGUCg -3'
miRNA:   3'- uaGGC-AGCUG---CGGCUGCAU-----GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 5137 0.78 0.09156
Target:  5'- -gCCGgugCGGCGUCGGCGUACGCguaGCCc -3'
miRNA:   3'- uaGGCa--GCUGCGGCUGCAUGCGg--CGG- -5'
18681 3' -59.1 NC_004682.1 + 5957 0.67 0.47808
Target:  5'- -gCCGUCGcgagcaacGCGCuCGACGUACuCaacaGCCa -3'
miRNA:   3'- uaGGCAGC--------UGCG-GCUGCAUGcGg---CGG- -5'
18681 3' -59.1 NC_004682.1 + 6189 0.72 0.234999
Target:  5'- --aCGaCGACGCUGACGUucagcgcgaguacgaACGCCGCa -3'
miRNA:   3'- uagGCaGCUGCGGCUGCA---------------UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 6207 0.78 0.094121
Target:  5'- -gCCGUCGuACGCCuuGGCGUAgGCCGCg -3'
miRNA:   3'- uaGGCAGC-UGCGG--CUGCAUgCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 7116 0.68 0.394048
Target:  5'- -aCUGUCGACGgCGGCugGUAC-CUGCCc -3'
miRNA:   3'- uaGGCAGCUGCgGCUG--CAUGcGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 8855 0.68 0.411894
Target:  5'- aGUCCGa--GCGCCGGCccgACGCCGUa -3'
miRNA:   3'- -UAGGCagcUGCGGCUGca-UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 9108 0.67 0.458614
Target:  5'- -gUCGacUCGAUGUCGAgguCGUugGCCuGCCa -3'
miRNA:   3'- uaGGC--AGCUGCGGCU---GCAugCGG-CGG- -5'
18681 3' -59.1 NC_004682.1 + 9918 1.1 0.00039
Target:  5'- gAUCCGUCGACGCCGACGUACGCCGCCa -3'
miRNA:   3'- -UAGGCAGCUGCGGCUGCAUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 9986 0.73 0.194404
Target:  5'- --aCGUCGGCGUCGACGgauCG-CGCCa -3'
miRNA:   3'- uagGCAGCUGCGGCUGCau-GCgGCGG- -5'
18681 3' -59.1 NC_004682.1 + 10184 0.69 0.335668
Target:  5'- -gCUGcgUGACGuuGGaagaGUACGCCGCCc -3'
miRNA:   3'- uaGGCa-GCUGCggCUg---CAUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 12072 0.71 0.257206
Target:  5'- -cUUGUCGAUGCCGugGaugGCaGCCGCg -3'
miRNA:   3'- uaGGCAGCUGCGGCugCa--UG-CGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.