miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 3' -59.1 NC_004682.1 + 12957 0.67 0.439579
Target:  5'- uGUCaCGUCgGACGCCGuuGCGUACGgcaUGUCu -3'
miRNA:   3'- -UAG-GCAG-CUGCGGC--UGCAUGCg--GCGG- -5'
18681 3' -59.1 NC_004682.1 + 13591 0.69 0.359895
Target:  5'- -cCCGUCG-UGCCGACGUACcggacUgGCCu -3'
miRNA:   3'- uaGGCAGCuGCGGCUGCAUGc----GgCGG- -5'
18681 3' -59.1 NC_004682.1 + 13774 0.68 0.421003
Target:  5'- ---aGUCGAUGCgGGCgGUGCGCCGa- -3'
miRNA:   3'- uaggCAGCUGCGgCUG-CAUGCGGCgg -5'
18681 3' -59.1 NC_004682.1 + 14586 0.68 0.402909
Target:  5'- -gCCGUCGGCuaCG-UGUACaCCGCCc -3'
miRNA:   3'- uaGGCAGCUGcgGCuGCAUGcGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 14797 0.71 0.283862
Target:  5'- -aCCGUCGAaGCCGAacuCGggcAUGUCGCCa -3'
miRNA:   3'- uaGGCAGCUgCGGCU---GCa--UGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 15341 0.69 0.376711
Target:  5'- --gCGaCGACGCCGuCGUGCuCCGCa -3'
miRNA:   3'- uagGCaGCUGCGGCuGCAUGcGGCGg -5'
18681 3' -59.1 NC_004682.1 + 15917 0.66 0.518168
Target:  5'- uUCCaaGUCGAaGCCGAa----GCCGCCa -3'
miRNA:   3'- uAGG--CAGCUgCGGCUgcaugCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 16276 0.66 0.518168
Target:  5'- -aCCGUCGAUGugaacaccgaCCGGCGUGCaGCCcagacGCUc -3'
miRNA:   3'- uaGGCAGCUGC----------GGCUGCAUG-CGG-----CGG- -5'
18681 3' -59.1 NC_004682.1 + 17666 0.7 0.290858
Target:  5'- uGUCCG-CGAgcguggugaaCGCUGGCGUgaGCGCCGUg -3'
miRNA:   3'- -UAGGCaGCU----------GCGGCUGCA--UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 17685 0.66 0.508013
Target:  5'- -aUCGgcaCGACGCUGACcacgGCGCUGCa -3'
miRNA:   3'- uaGGCa--GCUGCGGCUGca--UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 18961 0.66 0.496941
Target:  5'- gAUCCGUUGugGCCcuGGCGaagucguagggcaUACgaGCCGUCu -3'
miRNA:   3'- -UAGGCAGCugCGG--CUGC-------------AUG--CGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 19978 0.66 0.538712
Target:  5'- -gCCGUCGGauCGCCGACG-AgGCUGaUCu -3'
miRNA:   3'- uaGGCAGCU--GCGGCUGCaUgCGGC-GG- -5'
18681 3' -59.1 NC_004682.1 + 26008 0.67 0.468295
Target:  5'- -gCCGUCgcgauGAgGCCGGCGU-CGgacucCCGCCg -3'
miRNA:   3'- uaGGCAG-----CUgCGGCUGCAuGC-----GGCGG- -5'
18681 3' -59.1 NC_004682.1 + 26458 0.66 0.518168
Target:  5'- -aCCGUCG-UGCCGAUcuUGCucCCGCCa -3'
miRNA:   3'- uaGGCAGCuGCGGCUGc-AUGc-GGCGG- -5'
18681 3' -59.1 NC_004682.1 + 27427 0.75 0.145436
Target:  5'- -gCCGUCGGCGCacuGGCGUucuCGCUGUCg -3'
miRNA:   3'- uaGGCAGCUGCGg--CUGCAu--GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 27525 0.67 0.458614
Target:  5'- uGUCa-UCGACGgCGGCGUGauaGUCGCUa -3'
miRNA:   3'- -UAGgcAGCUGCgGCUGCAUg--CGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 27615 0.68 0.385315
Target:  5'- --gUGUCGcCGCCGuaGCGacuaucACGCCGCCg -3'
miRNA:   3'- uagGCAGCuGCGGC--UGCa-----UGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 28281 0.71 0.25087
Target:  5'- -gCUGUCGAaaGCUGAUcgACGCCGCCg -3'
miRNA:   3'- uaGGCAGCUg-CGGCUGcaUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 29320 0.66 0.538712
Target:  5'- cUCCuggugGUCGGUGCCGACGUGgaCCGCg -3'
miRNA:   3'- uAGG-----CAGCUGCGGCUGCAUgcGGCGg -5'
18681 3' -59.1 NC_004682.1 + 29334 0.69 0.351685
Target:  5'- ---gGcCGAUGCCGACuucauCGCCGCCg -3'
miRNA:   3'- uaggCaGCUGCGGCUGcau--GCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.