miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 3' -59.1 NC_004682.1 + 49800 0.67 0.487964
Target:  5'- -cCUGUCGcguucccucACGCCGACGUGuguuuccacCGCuCGUCa -3'
miRNA:   3'- uaGGCAGC---------UGCGGCUGCAU---------GCG-GCGG- -5'
18681 3' -59.1 NC_004682.1 + 49316 0.67 0.487964
Target:  5'- cGUgCGUUGACGCUGAUcacuuuGUG-GUCGCCg -3'
miRNA:   3'- -UAgGCAGCUGCGGCUG------CAUgCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 47472 0.68 0.402909
Target:  5'- -cCUGUcCGACGaaGGCGUcauCGCCGUCa -3'
miRNA:   3'- uaGGCA-GCUGCggCUGCAu--GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 47197 0.7 0.312655
Target:  5'- cAUCCGcauccUCGACGCCugagccaucacuGAC-UACGCCGUCc -3'
miRNA:   3'- -UAGGC-----AGCUGCGG------------CUGcAUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 47176 0.7 0.312655
Target:  5'- cUCCGUCGGugccgccuCGUCGGCGguacucacggUugGCUGCCu -3'
miRNA:   3'- uAGGCAGCU--------GCGGCUGC----------AugCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 46201 0.68 0.402909
Target:  5'- -gUCGcUCGGCGCUGcCG-ACGCgGCCa -3'
miRNA:   3'- uaGGC-AGCUGCGGCuGCaUGCGgCGG- -5'
18681 3' -59.1 NC_004682.1 + 45491 0.72 0.215526
Target:  5'- --gCGUUGAUGCCuccgugcucagcGAUGUGCGCCGCa -3'
miRNA:   3'- uagGCAGCUGCGG------------CUGCAUGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 44716 0.67 0.487964
Target:  5'- uUCuCGUCGGgcaUGCCGACGc-CGCCggugGCCa -3'
miRNA:   3'- uAG-GCAGCU---GCGGCUGCauGCGG----CGG- -5'
18681 3' -59.1 NC_004682.1 + 43591 0.69 0.341213
Target:  5'- cUCCGUCGAgGUCGAUGUcgaaacccagcucgAUGCCugggguGCCg -3'
miRNA:   3'- uAGGCAGCUgCGGCUGCA--------------UGCGG------CGG- -5'
18681 3' -59.1 NC_004682.1 + 42567 0.74 0.179771
Target:  5'- cGUCUGuUCGACGCUGAgGUG-GCCGCa -3'
miRNA:   3'- -UAGGC-AGCUGCGGCUgCAUgCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 39339 0.67 0.487964
Target:  5'- -gCCGUUGGCG-CGGCGgcaGCCGUa -3'
miRNA:   3'- uaGGCAGCUGCgGCUGCaugCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 39306 0.68 0.394048
Target:  5'- -gUgGUCGugGUCGACGcugaGCCGCUu -3'
miRNA:   3'- uaGgCAGCugCGGCUGCaug-CGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 38818 0.69 0.376711
Target:  5'- -aCUGUCGggaaggcuGCGCCGGuauCGUuccguCGCCGCCc -3'
miRNA:   3'- uaGGCAGC--------UGCGGCU---GCAu----GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 38105 0.66 0.507003
Target:  5'- -gCUGUCGGCGCUGAggcaccucggcacCGaggagGCGCUGUCg -3'
miRNA:   3'- uaGGCAGCUGCGGCU-------------GCa----UGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 35190 0.71 0.257206
Target:  5'- aGUgCGUgGugGCCGGCGgugUGCGCCGgUCa -3'
miRNA:   3'- -UAgGCAgCugCGGCUGC---AUGCGGC-GG- -5'
18681 3' -59.1 NC_004682.1 + 34762 0.68 0.385315
Target:  5'- -gCCGUUGcCGUgcGCGaACGCCGCCa -3'
miRNA:   3'- uaGGCAGCuGCGgcUGCaUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 32949 0.67 0.47808
Target:  5'- --aCGUCGAC-CCGACGgagcuggGCGuccacgaaCCGCCa -3'
miRNA:   3'- uagGCAGCUGcGGCUGCa------UGC--------GGCGG- -5'
18681 3' -59.1 NC_004682.1 + 32883 0.76 0.120417
Target:  5'- cUCCGUCGG-GUCGACGUaACGCUGCg -3'
miRNA:   3'- uAGGCAGCUgCGGCUGCA-UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 29334 0.69 0.351685
Target:  5'- ---gGcCGAUGCCGACuucauCGCCGCCg -3'
miRNA:   3'- uaggCaGCUGCGGCUGcau--GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 29320 0.66 0.538712
Target:  5'- cUCCuggugGUCGGUGCCGACGUGgaCCGCg -3'
miRNA:   3'- uAGG-----CAGCUGCGGCUGCAUgcGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.