miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 3' -59.1 NC_004682.1 + 49316 0.67 0.487964
Target:  5'- cGUgCGUUGACGCUGAUcacuuuGUG-GUCGCCg -3'
miRNA:   3'- -UAgGCAGCUGCGGCUG------CAUgCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 39306 0.68 0.394048
Target:  5'- -gUgGUCGugGUCGACGcugaGCCGCUu -3'
miRNA:   3'- uaGgCAGCugCGGCUGCaug-CGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 7116 0.68 0.394048
Target:  5'- -aCUGUCGACGgCGGCugGUAC-CUGCCc -3'
miRNA:   3'- uaGGCAGCUGCgGCUG--CAUGcGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 14586 0.68 0.402909
Target:  5'- -gCCGUCGGCuaCG-UGUACaCCGCCc -3'
miRNA:   3'- uaGGCAGCUGcgGCuGCAUGcGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 8855 0.68 0.411894
Target:  5'- aGUCCGa--GCGCCGGCccgACGCCGUa -3'
miRNA:   3'- -UAGGCagcUGCGGCUGca-UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 27525 0.67 0.458614
Target:  5'- uGUCa-UCGACGgCGGCGUGauaGUCGCUa -3'
miRNA:   3'- -UAGgcAGCUGCgGCUGCAUg--CGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 26008 0.67 0.468295
Target:  5'- -gCCGUCgcgauGAgGCCGGCGU-CGgacucCCGCCg -3'
miRNA:   3'- uaGGCAG-----CUgCGGCUGCAuGC-----GGCGG- -5'
18681 3' -59.1 NC_004682.1 + 44716 0.67 0.487964
Target:  5'- uUCuCGUCGGgcaUGCCGACGc-CGCCggugGCCa -3'
miRNA:   3'- uAG-GCAGCU---GCGGCUGCauGCGG----CGG- -5'
18681 3' -59.1 NC_004682.1 + 39339 0.67 0.487964
Target:  5'- -gCCGUUGGCG-CGGCGgcaGCCGUa -3'
miRNA:   3'- uaGGCAGCUGCgGCUGCaugCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 34762 0.68 0.385315
Target:  5'- -gCCGUUGcCGUgcGCGaACGCCGCCa -3'
miRNA:   3'- uaGGCAGCuGCGgcUGCaUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 38818 0.69 0.376711
Target:  5'- -aCUGUCGggaaggcuGCGCCGGuauCGUuccguCGCCGCCc -3'
miRNA:   3'- uaGGCAGC--------UGCGGCU---GCAu----GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 15341 0.69 0.376711
Target:  5'- --gCGaCGACGCCGuCGUGCuCCGCa -3'
miRNA:   3'- uagGCaGCUGCGGCuGCAUGcGGCGg -5'
18681 3' -59.1 NC_004682.1 + 32883 0.76 0.120417
Target:  5'- cUCCGUCGG-GUCGACGUaACGCUGCg -3'
miRNA:   3'- uAGGCAGCUgCGGCUGCA-UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 27427 0.75 0.145436
Target:  5'- -gCCGUCGGCGCacuGGCGUucuCGCUGUCg -3'
miRNA:   3'- uaGGCAGCUGCGg--CUGCAu--GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 45491 0.72 0.215526
Target:  5'- --gCGUUGAUGCCuccgugcucagcGAUGUGCGCCGCa -3'
miRNA:   3'- uagGCAGCUGCGG------------CUGCAUGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 490 0.72 0.232634
Target:  5'- uUCCGgCGGCGCucacCGAC--GCGCCGCCc -3'
miRNA:   3'- uAGGCaGCUGCG----GCUGcaUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 6189 0.72 0.234999
Target:  5'- --aCGaCGACGCUGACGUucagcgcgaguacgaACGCCGCa -3'
miRNA:   3'- uagGCaGCUGCGGCUGCA---------------UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 47176 0.7 0.312655
Target:  5'- cUCCGUCGGugccgccuCGUCGGCGguacucacggUugGCUGCCu -3'
miRNA:   3'- uAGGCAGCU--------GCGGCUGC----------AugCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 10184 0.69 0.335668
Target:  5'- -gCUGcgUGACGuuGGaagaGUACGCCGCCc -3'
miRNA:   3'- uaGGCa-GCUGCggCUg---CAUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 43591 0.69 0.341213
Target:  5'- cUCCGUCGAgGUCGAUGUcgaaacccagcucgAUGCCugggguGCCg -3'
miRNA:   3'- uAGGCAGCUgCGGCUGCA--------------UGCGG------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.