miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 3' -59.1 NC_004682.1 + 6189 0.72 0.234999
Target:  5'- --aCGaCGACGCUGACGUucagcgcgaguacgaACGCCGCa -3'
miRNA:   3'- uagGCaGCUGCGGCUGCA---------------UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 47176 0.7 0.312655
Target:  5'- cUCCGUCGGugccgccuCGUCGGCGguacucacggUugGCUGCCu -3'
miRNA:   3'- uAGGCAGCU--------GCGGCUGC----------AugCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 10184 0.69 0.335668
Target:  5'- -gCUGcgUGACGuuGGaagaGUACGCCGCCc -3'
miRNA:   3'- uaGGCa-GCUGCggCUg---CAUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 43591 0.69 0.341213
Target:  5'- cUCCGUCGAgGUCGAUGUcgaaacccagcucgAUGCCugggguGCCg -3'
miRNA:   3'- uAGGCAGCUgCGGCUGCA--------------UGCGG------CGG- -5'
18681 3' -59.1 NC_004682.1 + 15341 0.69 0.376711
Target:  5'- --gCGaCGACGCCGuCGUGCuCCGCa -3'
miRNA:   3'- uagGCaGCUGCGGCuGCAUGcGGCGg -5'
18681 3' -59.1 NC_004682.1 + 38818 0.69 0.376711
Target:  5'- -aCUGUCGggaaggcuGCGCCGGuauCGUuccguCGCCGCCc -3'
miRNA:   3'- uaGGCAGC--------UGCGGCU---GCAu----GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 34762 0.68 0.385315
Target:  5'- -gCCGUUGcCGUgcGCGaACGCCGCCa -3'
miRNA:   3'- uaGGCAGCuGCGgcUGCaUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 39306 0.68 0.394048
Target:  5'- -gUgGUCGugGUCGACGcugaGCCGCUu -3'
miRNA:   3'- uaGgCAGCugCGGCUGCaug-CGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 9108 0.67 0.458614
Target:  5'- -gUCGacUCGAUGUCGAgguCGUugGCCuGCCa -3'
miRNA:   3'- uaGGC--AGCUGCGGCU---GCAugCGG-CGG- -5'
18681 3' -59.1 NC_004682.1 + 1806 0.67 0.458614
Target:  5'- -gCCgGUCGGCguGCCGACGUAgGaCagaGCCg -3'
miRNA:   3'- uaGG-CAGCUG--CGGCUGCAUgC-Gg--CGG- -5'
18681 3' -59.1 NC_004682.1 + 12957 0.67 0.439579
Target:  5'- uGUCaCGUCgGACGCCGuuGCGUACGgcaUGUCu -3'
miRNA:   3'- -UAG-GCAG-CUGCGGC--UGCAUGCg--GCGG- -5'
18681 3' -59.1 NC_004682.1 + 13774 0.68 0.421003
Target:  5'- ---aGUCGAUGCgGGCgGUGCGCCGa- -3'
miRNA:   3'- uaggCAGCUGCGgCUG-CAUGCGGCgg -5'
18681 3' -59.1 NC_004682.1 + 4765 0.68 0.402909
Target:  5'- -cCUGcUCGAUcagGCCGACGUAgucggUGCCGUCg -3'
miRNA:   3'- uaGGC-AGCUG---CGGCUGCAU-----GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 32949 0.67 0.47808
Target:  5'- --aCGUCGAC-CCGACGgagcuggGCGuccacgaaCCGCCa -3'
miRNA:   3'- uagGCAGCUGcGGCUGCa------UGC--------GGCGG- -5'
18681 3' -59.1 NC_004682.1 + 5957 0.67 0.47808
Target:  5'- -gCCGUCGcgagcaacGCGCuCGACGUACuCaacaGCCa -3'
miRNA:   3'- uaGGCAGC--------UGCG-GCUGCAUGcGg---CGG- -5'
18681 3' -59.1 NC_004682.1 + 18961 0.66 0.496941
Target:  5'- gAUCCGUUGugGCCcuGGCGaagucguagggcaUACgaGCCGUCu -3'
miRNA:   3'- -UAGGCAGCugCGG--CUGC-------------AUG--CGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 2110 0.66 0.497944
Target:  5'- aGUCCG-CGugGacccuCGACacccuggacggGUGCGCCGUCg -3'
miRNA:   3'- -UAGGCaGCugCg----GCUG-----------CAUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 38105 0.66 0.507003
Target:  5'- -gCUGUCGGCGCUGAggcaccucggcacCGaggagGCGCUGUCg -3'
miRNA:   3'- uaGGCAGCUGCGGCU-------------GCa----UGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 3234 0.66 0.518168
Target:  5'- -cCCGcCGugGUgcccgaguUGGCGgcugcUGCGCCGCCu -3'
miRNA:   3'- uaGGCaGCugCG--------GCUGC-----AUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 5137 0.78 0.09156
Target:  5'- -gCCGgugCGGCGUCGGCGUACGCguaGCCc -3'
miRNA:   3'- uaGGCa--GCUGCGGCUGCAUGCGg--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.