Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18681 | 3' | -59.1 | NC_004682.1 | + | 19978 | 0.66 | 0.538712 |
Target: 5'- -gCCGUCGGauCGCCGACG-AgGCUGaUCu -3' miRNA: 3'- uaGGCAGCU--GCGGCUGCaUgCGGC-GG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 29334 | 0.69 | 0.351685 |
Target: 5'- ---gGcCGAUGCCGACuucauCGCCGCCg -3' miRNA: 3'- uaggCaGCUGCGGCUGcau--GCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 3069 | 0.7 | 0.291565 |
Target: 5'- --aUGUCGACGCCgcgucggaggguGACGgaguuccacugcccaGCGCCGCCg -3' miRNA: 3'- uagGCAGCUGCGG------------CUGCa--------------UGCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 5137 | 0.78 | 0.09156 |
Target: 5'- -gCCGgugCGGCGUCGGCGUACGCguaGCCc -3' miRNA: 3'- uaGGCa--GCUGCGGCUGCAUGCGg--CGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 18961 | 0.66 | 0.496941 |
Target: 5'- gAUCCGUUGugGCCcuGGCGaagucguagggcaUACgaGCCGUCu -3' miRNA: 3'- -UAGGCAGCugCGG--CUGC-------------AUG--CGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 5957 | 0.67 | 0.47808 |
Target: 5'- -gCCGUCGcgagcaacGCGCuCGACGUACuCaacaGCCa -3' miRNA: 3'- uaGGCAGC--------UGCG-GCUGCAUGcGg---CGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 9108 | 0.67 | 0.458614 |
Target: 5'- -gUCGacUCGAUGUCGAgguCGUugGCCuGCCa -3' miRNA: 3'- uaGGC--AGCUGCGGCU---GCAugCGG-CGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 1806 | 0.67 | 0.458614 |
Target: 5'- -gCCgGUCGGCguGCCGACGUAgGaCagaGCCg -3' miRNA: 3'- uaGG-CAGCUG--CGGCUGCAUgC-Gg--CGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 4765 | 0.68 | 0.402909 |
Target: 5'- -cCUGcUCGAUcagGCCGACGUAgucggUGCCGUCg -3' miRNA: 3'- uaGGC-AGCUG---CGGCUGCAU-----GCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 13591 | 0.69 | 0.359895 |
Target: 5'- -cCCGUCG-UGCCGACGUACcggacUgGCCu -3' miRNA: 3'- uaGGCAGCuGCGGCUGCAUGc----GgCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 47472 | 0.68 | 0.402909 |
Target: 5'- -cCUGUcCGACGaaGGCGUcauCGCCGUCa -3' miRNA: 3'- uaGGCA-GCUGCggCUGCAu--GCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 13774 | 0.68 | 0.421003 |
Target: 5'- ---aGUCGAUGCgGGCgGUGCGCCGa- -3' miRNA: 3'- uaggCAGCUGCGgCUG-CAUGCGGCgg -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 3234 | 0.66 | 0.518168 |
Target: 5'- -cCCGcCGugGUgcccgaguUGGCGgcugcUGCGCCGCCu -3' miRNA: 3'- uaGGCaGCugCG--------GCUGC-----AUGCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 27615 | 0.68 | 0.385315 |
Target: 5'- --gUGUCGcCGCCGuaGCGacuaucACGCCGCCg -3' miRNA: 3'- uagGCAGCuGCGGC--UGCa-----UGCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 38105 | 0.66 | 0.507003 |
Target: 5'- -gCUGUCGGCGCUGAggcaccucggcacCGaggagGCGCUGUCg -3' miRNA: 3'- uaGGCAGCUGCGGCU-------------GCa----UGCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 12957 | 0.67 | 0.439579 |
Target: 5'- uGUCaCGUCgGACGCCGuuGCGUACGgcaUGUCu -3' miRNA: 3'- -UAG-GCAG-CUGCGGC--UGCAUGCg--GCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 3384 | 0.69 | 0.362383 |
Target: 5'- gAUCCGUUGGCaccagcgccgccgcuGCCGAaggugaaCGUAuggcuggcacCGCCGCCa -3' miRNA: 3'- -UAGGCAGCUG---------------CGGCU-------GCAU----------GCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 47197 | 0.7 | 0.312655 |
Target: 5'- cAUCCGcauccUCGACGCCugagccaucacuGAC-UACGCCGUCc -3' miRNA: 3'- -UAGGC-----AGCUGCGG------------CUGcAUGCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 2110 | 0.66 | 0.497944 |
Target: 5'- aGUCCG-CGugGacccuCGACacccuggacggGUGCGCCGUCg -3' miRNA: 3'- -UAGGCaGCugCg----GCUG-----------CAUGCGGCGG- -5' |
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18681 | 3' | -59.1 | NC_004682.1 | + | 32949 | 0.67 | 0.47808 |
Target: 5'- --aCGUCGAC-CCGACGgagcuggGCGuccacgaaCCGCCa -3' miRNA: 3'- uagGCAGCUGcGGCUGCa------UGC--------GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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