miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 3' -59.1 NC_004682.1 + 3069 0.7 0.291565
Target:  5'- --aUGUCGACGCCgcgucggaggguGACGgaguuccacugcccaGCGCCGCCg -3'
miRNA:   3'- uagGCAGCUGCGG------------CUGCa--------------UGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 13591 0.69 0.359895
Target:  5'- -cCCGUCG-UGCCGACGUACcggacUgGCCu -3'
miRNA:   3'- uaGGCAGCuGCGGCUGCAUGc----GgCGG- -5'
18681 3' -59.1 NC_004682.1 + 9986 0.73 0.194404
Target:  5'- --aCGUCGGCGUCGACGgauCG-CGCCa -3'
miRNA:   3'- uagGCAGCUGCGGCUGCau-GCgGCGG- -5'
18681 3' -59.1 NC_004682.1 + 35190 0.71 0.257206
Target:  5'- aGUgCGUgGugGCCGGCGgugUGCGCCGgUCa -3'
miRNA:   3'- -UAgGCAgCugCGGCUGC---AUGCGGC-GG- -5'
18681 3' -59.1 NC_004682.1 + 3384 0.69 0.362383
Target:  5'- gAUCCGUUGGCaccagcgccgccgcuGCCGAaggugaaCGUAuggcuggcacCGCCGCCa -3'
miRNA:   3'- -UAGGCAGCUG---------------CGGCU-------GCAU----------GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 5137 0.78 0.09156
Target:  5'- -gCCGgugCGGCGUCGGCGUACGCguaGCCc -3'
miRNA:   3'- uaGGCa--GCUGCGGCUGCAUGCGg--CGG- -5'
18681 3' -59.1 NC_004682.1 + 27615 0.68 0.385315
Target:  5'- --gUGUCGcCGCCGuaGCGacuaucACGCCGCCg -3'
miRNA:   3'- uagGCAGCuGCGGC--UGCa-----UGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 47472 0.68 0.402909
Target:  5'- -cCUGUcCGACGaaGGCGUcauCGCCGUCa -3'
miRNA:   3'- uaGGCA-GCUGCggCUGCAu--GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 47197 0.7 0.312655
Target:  5'- cAUCCGcauccUCGACGCCugagccaucacuGAC-UACGCCGUCc -3'
miRNA:   3'- -UAGGC-----AGCUGCGG------------CUGcAUGCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 29334 0.69 0.351685
Target:  5'- ---gGcCGAUGCCGACuucauCGCCGCCg -3'
miRNA:   3'- uaggCaGCUGCGGCUGcau--GCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 39306 0.68 0.394048
Target:  5'- -gUgGUCGugGUCGACGcugaGCCGCUu -3'
miRNA:   3'- uaGgCAGCugCGGCUGCaug-CGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 14586 0.68 0.402909
Target:  5'- -gCCGUCGGCuaCG-UGUACaCCGCCc -3'
miRNA:   3'- uaGGCAGCUGcgGCuGCAUGcGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 7116 0.68 0.394048
Target:  5'- -aCUGUCGACGgCGGCugGUAC-CUGCCc -3'
miRNA:   3'- uaGGCAGCUGCgGCUG--CAUGcGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 677 0.66 0.518168
Target:  5'- cAUCCGUCGugGUgaCGACcauucACG-CGCCa -3'
miRNA:   3'- -UAGGCAGCugCG--GCUGca---UGCgGCGG- -5'
18681 3' -59.1 NC_004682.1 + 47176 0.7 0.312655
Target:  5'- cUCCGUCGGugccgccuCGUCGGCGguacucacggUugGCUGCCu -3'
miRNA:   3'- uAGGCAGCU--------GCGGCUGC----------AugCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 15917 0.66 0.518168
Target:  5'- uUCCaaGUCGAaGCCGAa----GCCGCCa -3'
miRNA:   3'- uAGG--CAGCUgCGGCUgcaugCGGCGG- -5'
18681 3' -59.1 NC_004682.1 + 26458 0.66 0.518168
Target:  5'- -aCCGUCG-UGCCGAUcuUGCucCCGCCa -3'
miRNA:   3'- uaGGCAGCuGCGGCUGc-AUGc-GGCGG- -5'
18681 3' -59.1 NC_004682.1 + 16276 0.66 0.518168
Target:  5'- -aCCGUCGAUGugaacaccgaCCGGCGUGCaGCCcagacGCUc -3'
miRNA:   3'- uaGGCAGCUGC----------GGCUGCAUG-CGG-----CGG- -5'
18681 3' -59.1 NC_004682.1 + 6189 0.72 0.234999
Target:  5'- --aCGaCGACGCUGACGUucagcgcgaguacgaACGCCGCa -3'
miRNA:   3'- uagGCaGCUGCGGCUGCA---------------UGCGGCGg -5'
18681 3' -59.1 NC_004682.1 + 29320 0.66 0.538712
Target:  5'- cUCCuggugGUCGGUGCCGACGUGgaCCGCg -3'
miRNA:   3'- uAGG-----CAGCUGCGGCUGCAUgcGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.