miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 5' -49.8 NC_004682.1 + 20948 0.66 0.951386
Target:  5'- uGCAGCu-CCGGGC---GCAGgAACGGg -3'
miRNA:   3'- -CGUCGcuGGUUCGagaUGUUgUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 17722 0.66 0.951386
Target:  5'- -gGGCGucaggauguuGCCGAGCgUCUGCAgguugggcaccaGCAGCGa -3'
miRNA:   3'- cgUCGC----------UGGUUCG-AGAUGU------------UGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 45968 0.66 0.951386
Target:  5'- uGCAGCaucGAgCGgaAGCUCUcCAGC-GCGGa -3'
miRNA:   3'- -CGUCG---CUgGU--UCGAGAuGUUGuUGCC- -5'
18681 5' -49.8 NC_004682.1 + 9810 0.66 0.946664
Target:  5'- uCAGCcgaGGCCGGGUUCUcagacgagaACGACAgguaguACGGg -3'
miRNA:   3'- cGUCG---CUGGUUCGAGA---------UGUUGU------UGCC- -5'
18681 5' -49.8 NC_004682.1 + 17672 0.66 0.946664
Target:  5'- cGUAGCGACCAugaUCggcACGACGcugaccACGGc -3'
miRNA:   3'- -CGUCGCUGGUucgAGa--UGUUGU------UGCC- -5'
18681 5' -49.8 NC_004682.1 + 28081 0.66 0.946664
Target:  5'- uCGGCGACgaagacgcuCGGGCguggCUGCucGCGGCGGc -3'
miRNA:   3'- cGUCGCUG---------GUUCGa---GAUGu-UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 22743 0.66 0.946664
Target:  5'- cGCAGCcgcugGACCuGAGCgagCUguucgaugACGACAACGa -3'
miRNA:   3'- -CGUCG-----CUGG-UUCGa--GA--------UGUUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 4423 0.66 0.946664
Target:  5'- gGCGGUcACCAGcGC-CUugGugAGCGGc -3'
miRNA:   3'- -CGUCGcUGGUU-CGaGAugUugUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 28687 0.66 0.946176
Target:  5'- uCGGCGuGCCGAuGCcgcccacUCgcgGCGGCGGCGGg -3'
miRNA:   3'- cGUCGC-UGGUU-CG-------AGa--UGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 7841 0.66 0.941649
Target:  5'- gGCGGuCGACaccggcauGCUCUACGACGcccUGGa -3'
miRNA:   3'- -CGUC-GCUGguu-----CGAGAUGUUGUu--GCC- -5'
18681 5' -49.8 NC_004682.1 + 26373 0.66 0.936339
Target:  5'- cGCAGCGGCCuccuGGaUCUGCuuccACGucgcCGGg -3'
miRNA:   3'- -CGUCGCUGGu---UCgAGAUGu---UGUu---GCC- -5'
18681 5' -49.8 NC_004682.1 + 44357 0.66 0.936339
Target:  5'- --cGUGGCCGAcCUCuUGCAGCGgucACGGg -3'
miRNA:   3'- cguCGCUGGUUcGAG-AUGUUGU---UGCC- -5'
18681 5' -49.8 NC_004682.1 + 21586 0.66 0.935241
Target:  5'- gGCGGUGagucgauGCCAGGCgucaacgaggcgaUCU-CGGCGGCGGu -3'
miRNA:   3'- -CGUCGC-------UGGUUCG-------------AGAuGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 23839 0.66 0.93073
Target:  5'- uGCGGUcaccgaccuGACCAAGCacaUCaACAACA-CGGu -3'
miRNA:   3'- -CGUCG---------CUGGUUCG---AGaUGUUGUuGCC- -5'
18681 5' -49.8 NC_004682.1 + 11065 0.66 0.928989
Target:  5'- aGCAGCGAauucggaCAuGCgaacuucgccccguUCgagGCGACGACGGa -3'
miRNA:   3'- -CGUCGCUg------GUuCG--------------AGa--UGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 46605 0.67 0.924822
Target:  5'- aGCGGgacgcacguucuCGACCAGGC---GCAGCAucuGCGGg -3'
miRNA:   3'- -CGUC------------GCUGGUUCGagaUGUUGU---UGCC- -5'
18681 5' -49.8 NC_004682.1 + 26736 0.67 0.924822
Target:  5'- -uGGCGGCgAAGCUgCU-CGACGGCuGGu -3'
miRNA:   3'- cgUCGCUGgUUCGA-GAuGUUGUUG-CC- -5'
18681 5' -49.8 NC_004682.1 + 25709 0.67 0.918615
Target:  5'- -gAGCGcCCGgacAGCgCUACuuCGACGGg -3'
miRNA:   3'- cgUCGCuGGU---UCGaGAUGuuGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 25197 0.67 0.917978
Target:  5'- aCAGCGuCCAAGCUggcgaggCUGuCGGCAccguACGGc -3'
miRNA:   3'- cGUCGCuGGUUCGA-------GAU-GUUGU----UGCC- -5'
18681 5' -49.8 NC_004682.1 + 5924 0.67 0.912109
Target:  5'- -gGGCGuuCCAgcAGCUCgACGGCAAgGGc -3'
miRNA:   3'- cgUCGCu-GGU--UCGAGaUGUUGUUgCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.