miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 5' -49.8 NC_004682.1 + 26736 0.67 0.924822
Target:  5'- -uGGCGGCgAAGCUgCU-CGACGGCuGGu -3'
miRNA:   3'- cgUCGCUGgUUCGA-GAuGUUGUUG-CC- -5'
18681 5' -49.8 NC_004682.1 + 25709 0.67 0.918615
Target:  5'- -gAGCGcCCGgacAGCgCUACuuCGACGGg -3'
miRNA:   3'- cgUCGCuGGU---UCGaGAUGuuGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 21921 0.67 0.897486
Target:  5'- aGUAGUGGaagucgcCCAGGCccgucucgcuggUCUcCAGCAGCGGg -3'
miRNA:   3'- -CGUCGCU-------GGUUCG------------AGAuGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 30804 0.67 0.912109
Target:  5'- aGCGGCGACU-GGCU--GguGCGGCGGu -3'
miRNA:   3'- -CGUCGCUGGuUCGAgaUguUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 34836 0.67 0.912109
Target:  5'- gGCGGCGuuCGcgcacggcaacGGCagCUACGACAucACGGg -3'
miRNA:   3'- -CGUCGCugGU-----------UCGa-GAUGUUGU--UGCC- -5'
18681 5' -49.8 NC_004682.1 + 45357 0.67 0.905307
Target:  5'- aGCAGU-ACCAAcGCUucCUGCAGaAGCGGg -3'
miRNA:   3'- -CGUCGcUGGUU-CGA--GAUGUUgUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 7310 0.67 0.898211
Target:  5'- aCAGCGugaACCGAGC-CUguuccagcgucgGCAugAACGGc -3'
miRNA:   3'- cGUCGC---UGGUUCGaGA------------UGUugUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 47051 0.68 0.875206
Target:  5'- aGCAGgucGCCAAGCUgCUGCGcCAcGCGGa -3'
miRNA:   3'- -CGUCgc-UGGUUCGA-GAUGUuGU-UGCC- -5'
18681 5' -49.8 NC_004682.1 + 24538 0.68 0.875206
Target:  5'- gGCuGgGGCUucaucAGCUCUACGucgaACGGCGGc -3'
miRNA:   3'- -CGuCgCUGGu----UCGAGAUGU----UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 28319 0.68 0.861925
Target:  5'- cGgAGCGACC---CUCUACAucacccgagcccccuGCGACGGc -3'
miRNA:   3'- -CgUCGCUGGuucGAGAUGU---------------UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 46271 0.68 0.866985
Target:  5'- cCAGCGcCCGAGCgaacGCGGCGuuGCGGc -3'
miRNA:   3'- cGUCGCuGGUUCGaga-UGUUGU--UGCC- -5'
18681 5' -49.8 NC_004682.1 + 41757 0.68 0.866985
Target:  5'- aCAGCGACCGGGagagCUGgGugAACGc -3'
miRNA:   3'- cGUCGCUGGUUCga--GAUgUugUUGCc -5'
18681 5' -49.8 NC_004682.1 + 3276 0.68 0.883156
Target:  5'- gGCGGCGguGCCAGccauacGUUCaccuucgGCAGCGGCGGc -3'
miRNA:   3'- -CGUCGC--UGGUU------CGAGa------UGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 29275 0.68 0.890826
Target:  5'- gGCAuCGGCCucGCUCUggagguccGCAGCGAUGa -3'
miRNA:   3'- -CGUcGCUGGuuCGAGA--------UGUUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 7087 0.68 0.8585
Target:  5'- cGCAuGUGAUCGGGC-CUACGugGGCa- -3'
miRNA:   3'- -CGU-CGCUGGUUCGaGAUGUugUUGcc -5'
18681 5' -49.8 NC_004682.1 + 35629 0.68 0.8585
Target:  5'- gGCGGUGuCgGGGCcaaCUACAGCAAcCGGu -3'
miRNA:   3'- -CGUCGCuGgUUCGa--GAUGUUGUU-GCC- -5'
18681 5' -49.8 NC_004682.1 + 31955 0.68 0.890826
Target:  5'- cCAGCGAguCCcAGCUCgccaugaaGGCGACGGc -3'
miRNA:   3'- cGUCGCU--GGuUCGAGaug-----UUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 34851 0.69 0.812418
Target:  5'- uGCAGaCGACCucguuGGGCUCcccgacguuggACAGCGACGa -3'
miRNA:   3'- -CGUC-GCUGG-----UUCGAGa----------UGUUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 19962 0.69 0.831542
Target:  5'- aCAGCGGCCAucgcccgcaacGCgaCUGCcGCGACGGu -3'
miRNA:   3'- cGUCGCUGGUu----------CGa-GAUGuUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 23626 0.69 0.822088
Target:  5'- gGCGGUGGCCAAGaucaUCgACAcccugacCGACGGg -3'
miRNA:   3'- -CGUCGCUGGUUCg---AGaUGUu------GUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.