Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18681 | 5' | -49.8 | NC_004682.1 | + | 8512 | 0.71 | 0.717634 |
Target: 5'- cGCGGUGAUCGAGCaagaggUCUuCcACGACGGc -3' miRNA: 3'- -CGUCGCUGGUUCG------AGAuGuUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 31235 | 0.71 | 0.728703 |
Target: 5'- aGCGG-GAUC-AGCuUCUGCAGCAgACGGg -3' miRNA: 3'- -CGUCgCUGGuUCG-AGAUGUUGU-UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 14715 | 0.71 | 0.750516 |
Target: 5'- cGUGGCGAcaugcCCGAGUUCgGCuuCGACGGu -3' miRNA: 3'- -CGUCGCU-----GGUUCGAGaUGuuGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 27555 | 0.7 | 0.782226 |
Target: 5'- gGCGGCGACacuGGCgCUGCGGCAGa-- -3' miRNA: 3'- -CGUCGCUGgu-UCGaGAUGUUGUUgcc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 8955 | 0.7 | 0.802543 |
Target: 5'- cGCAGCGcGCCAggAGCUUgaggGCuucggcuCGGCGGg -3' miRNA: 3'- -CGUCGC-UGGU--UCGAGa---UGuu-----GUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 40417 | 0.7 | 0.771808 |
Target: 5'- cGCGGUGACCGcGCUCgacGCGgugaACcACGGu -3' miRNA: 3'- -CGUCGCUGGUuCGAGa--UGU----UGuUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 47419 | 0.69 | 0.812418 |
Target: 5'- gGCAGUGAUCgAAGCgaagcaCUACGaggagacgcgGCAGCGGc -3' miRNA: 3'- -CGUCGCUGG-UUCGa-----GAUGU----------UGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 46892 | 0.69 | 0.840769 |
Target: 5'- --cGCGAUCAAGUggUCUGCccggauCGACGGg -3' miRNA: 3'- cguCGCUGGUUCG--AGAUGuu----GUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 6956 | 0.69 | 0.822088 |
Target: 5'- aGCGGaCGcuguCCAAGCUCgauCAguugggacACAACGGa -3' miRNA: 3'- -CGUC-GCu---GGUUCGAGau-GU--------UGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 34851 | 0.69 | 0.812418 |
Target: 5'- uGCAGaCGACCucguuGGGCUCcccgacguuggACAGCGACGa -3' miRNA: 3'- -CGUC-GCUGG-----UUCGAGa----------UGUUGUUGCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 23626 | 0.69 | 0.822088 |
Target: 5'- gGCGGUGGCCAAGaucaUCgACAcccugacCGACGGg -3' miRNA: 3'- -CGUCGCUGGUUCg---AGaUGUu------GUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 19962 | 0.69 | 0.831542 |
Target: 5'- aCAGCGGCCAucgcccgcaacGCgaCUGCcGCGACGGu -3' miRNA: 3'- cGUCGCUGGUu----------CGa-GAUGuUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 24838 | 0.69 | 0.840769 |
Target: 5'- uCGGCcuggaaGACCGcuccgauGCUCUACAAgAACGGu -3' miRNA: 3'- cGUCG------CUGGUu------CGAGAUGUUgUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 46415 | 0.69 | 0.831542 |
Target: 5'- gGUAGagGACCAAgGCUCcGCucuCAGCGGa -3' miRNA: 3'- -CGUCg-CUGGUU-CGAGaUGuu-GUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 7087 | 0.68 | 0.8585 |
Target: 5'- cGCAuGUGAUCGGGC-CUACGugGGCa- -3' miRNA: 3'- -CGU-CGCUGGUUCGaGAUGUugUUGcc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 3276 | 0.68 | 0.883156 |
Target: 5'- gGCGGCGguGCCAGccauacGUUCaccuucgGCAGCGGCGGc -3' miRNA: 3'- -CGUCGC--UGGUU------CGAGa------UGUUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 29275 | 0.68 | 0.890826 |
Target: 5'- gGCAuCGGCCucGCUCUggagguccGCAGCGAUGa -3' miRNA: 3'- -CGUcGCUGGuuCGAGA--------UGUUGUUGCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 47051 | 0.68 | 0.875206 |
Target: 5'- aGCAGgucGCCAAGCUgCUGCGcCAcGCGGa -3' miRNA: 3'- -CGUCgc-UGGUUCGA-GAUGUuGU-UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 28319 | 0.68 | 0.861925 |
Target: 5'- cGgAGCGACC---CUCUACAucacccgagcccccuGCGACGGc -3' miRNA: 3'- -CgUCGCUGGuucGAGAUGU---------------UGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 31955 | 0.68 | 0.890826 |
Target: 5'- cCAGCGAguCCcAGCUCgccaugaaGGCGACGGc -3' miRNA: 3'- cGUCGCU--GGuUCGAGaug-----UUGUUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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