miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 5' -49.8 NC_004682.1 + 9953 1.13 0.001828
Target:  5'- cGCAGCGACCAAGCUCUACAACAACGGc -3'
miRNA:   3'- -CGUCGCUGGUUCGAGAUGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 38629 0.79 0.30429
Target:  5'- cCGGUGACCGgccacGGCUCUACAACAcgcucgcucugcuGCGGc -3'
miRNA:   3'- cGUCGCUGGU-----UCGAGAUGUUGU-------------UGCC- -5'
18681 5' -49.8 NC_004682.1 + 33562 0.77 0.391586
Target:  5'- cGCAGCaGGCCGcuGGCg--GCGGCAACGGc -3'
miRNA:   3'- -CGUCG-CUGGU--UCGagaUGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 46136 0.76 0.43039
Target:  5'- gGCAGCG-CCGAGCg--ACAGCAGCa- -3'
miRNA:   3'- -CGUCGCuGGUUCGagaUGUUGUUGcc -5'
18681 5' -49.8 NC_004682.1 + 31786 0.76 0.440439
Target:  5'- cGgAGaCGACCGGGCuggacaUCUACAGCGACGa -3'
miRNA:   3'- -CgUC-GCUGGUUCG------AGAUGUUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 27645 0.75 0.503347
Target:  5'- -aGGCGaACCAgcGGCUCUGCcGCAGCGc -3'
miRNA:   3'- cgUCGC-UGGU--UCGAGAUGuUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 39241 0.75 0.514219
Target:  5'- cCGGCuGugCAGGUUCUugGugAACGGa -3'
miRNA:   3'- cGUCG-CugGUUCGAGAugUugUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 36014 0.74 0.547373
Target:  5'- uGCGGCGGCgAGGCcgcaaagcaguUCUACcGCAACGa -3'
miRNA:   3'- -CGUCGCUGgUUCG-----------AGAUGuUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 7667 0.74 0.558579
Target:  5'- uGCAG-GACCGGGCggCgagauCAACGACGGu -3'
miRNA:   3'- -CGUCgCUGGUUCGa-Gau---GUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 27773 0.73 0.638287
Target:  5'- aGUuGCGGCCAGGagccACAGCGGCGGg -3'
miRNA:   3'- -CGuCGCUGGUUCgagaUGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 33996 0.72 0.649735
Target:  5'- aGCAGUGGCCGauggagucgaugAGgaCUGCGcCAACGGc -3'
miRNA:   3'- -CGUCGCUGGU------------UCgaGAUGUuGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 38518 0.72 0.661165
Target:  5'- cGCGaUGAUCGGGCUCUGCcGCAGCa- -3'
miRNA:   3'- -CGUcGCUGGUUCGAGAUGuUGUUGcc -5'
18681 5' -49.8 NC_004682.1 + 30461 0.72 0.680523
Target:  5'- uGCAGCGGCUGAGCgccaagCUcCAGCGcgaggcgagccagaACGGg -3'
miRNA:   3'- -CGUCGCUGGUUCGa-----GAuGUUGU--------------UGCC- -5'
18681 5' -49.8 NC_004682.1 + 3155 0.72 0.683926
Target:  5'- aGCAGCcGCCAA-CUCggGCAccACGGCGGg -3'
miRNA:   3'- -CGUCGcUGGUUcGAGa-UGU--UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 12566 0.72 0.683926
Target:  5'- aCAGCGACCAuguuGUgCUGCcACAGCGa -3'
miRNA:   3'- cGUCGCUGGUu---CGaGAUGuUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 6130 0.72 0.695232
Target:  5'- cGCGGCcuacGCCAAgGCg-UACGACGGCGGg -3'
miRNA:   3'- -CGUCGc---UGGUU-CGagAUGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 8512 0.71 0.717634
Target:  5'- cGCGGUGAUCGAGCaagaggUCUuCcACGACGGc -3'
miRNA:   3'- -CGUCGCUGGUUCG------AGAuGuUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 16661 0.71 0.728703
Target:  5'- cGCugcGCGGCaugcGCUCggGCGGCAGCGGu -3'
miRNA:   3'- -CGu--CGCUGguu-CGAGa-UGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 31235 0.71 0.728703
Target:  5'- aGCGG-GAUC-AGCuUCUGCAGCAgACGGg -3'
miRNA:   3'- -CGUCgCUGGuUCG-AGAUGUUGU-UGCC- -5'
18681 5' -49.8 NC_004682.1 + 46140 0.71 0.739669
Target:  5'- uGCGGaGACCAGcacuGCcgCUGCGACGACGa -3'
miRNA:   3'- -CGUCgCUGGUU----CGa-GAUGUUGUUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.