Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18681 | 5' | -49.8 | NC_004682.1 | + | 24538 | 0.68 | 0.875206 |
Target: 5'- gGCuGgGGCUucaucAGCUCUACGucgaACGGCGGc -3' miRNA: 3'- -CGuCgCUGGu----UCGAGAUGU----UGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 3276 | 0.68 | 0.883156 |
Target: 5'- gGCGGCGguGCCAGccauacGUUCaccuucgGCAGCGGCGGc -3' miRNA: 3'- -CGUCGC--UGGUU------CGAGa------UGUUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 29275 | 0.68 | 0.890826 |
Target: 5'- gGCAuCGGCCucGCUCUggagguccGCAGCGAUGa -3' miRNA: 3'- -CGUcGCUGGuuCGAGA--------UGUUGUUGCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 31955 | 0.68 | 0.890826 |
Target: 5'- cCAGCGAguCCcAGCUCgccaugaaGGCGACGGc -3' miRNA: 3'- cGUCGCU--GGuUCGAGaug-----UUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 21921 | 0.67 | 0.897486 |
Target: 5'- aGUAGUGGaagucgcCCAGGCccgucucgcuggUCUcCAGCAGCGGg -3' miRNA: 3'- -CGUCGCU-------GGUUCG------------AGAuGUUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 7310 | 0.67 | 0.898211 |
Target: 5'- aCAGCGugaACCGAGC-CUguuccagcgucgGCAugAACGGc -3' miRNA: 3'- cGUCGC---UGGUUCGaGA------------UGUugUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 8918 | 0.67 | 0.898211 |
Target: 5'- cGCAuGuCGGCUAuccccGGCUCUACAuCGACGc -3' miRNA: 3'- -CGU-C-GCUGGU-----UCGAGAUGUuGUUGCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 45357 | 0.67 | 0.905307 |
Target: 5'- aGCAGU-ACCAAcGCUucCUGCAGaAGCGGg -3' miRNA: 3'- -CGUCGcUGGUU-CGA--GAUGUUgUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 48988 | 0.67 | 0.912109 |
Target: 5'- cGCGGCGuucgUCAAGgaCUGCGACAAgCGc -3' miRNA: 3'- -CGUCGCu---GGUUCgaGAUGUUGUU-GCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 34836 | 0.67 | 0.912109 |
Target: 5'- gGCGGCGuuCGcgcacggcaacGGCagCUACGACAucACGGg -3' miRNA: 3'- -CGUCGCugGU-----------UCGa-GAUGUUGU--UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 5924 | 0.67 | 0.912109 |
Target: 5'- -gGGCGuuCCAgcAGCUCgACGGCAAgGGc -3' miRNA: 3'- cgUCGCu-GGU--UCGAGaUGUUGUUgCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 30804 | 0.67 | 0.912109 |
Target: 5'- aGCGGCGACU-GGCU--GguGCGGCGGu -3' miRNA: 3'- -CGUCGCUGGuUCGAgaUguUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 25197 | 0.67 | 0.917978 |
Target: 5'- aCAGCGuCCAAGCUggcgaggCUGuCGGCAccguACGGc -3' miRNA: 3'- cGUCGCuGGUUCGA-------GAU-GUUGU----UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 25709 | 0.67 | 0.918615 |
Target: 5'- -gAGCGcCCGgacAGCgCUACuuCGACGGg -3' miRNA: 3'- cgUCGCuGGU---UCGaGAUGuuGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 26736 | 0.67 | 0.924822 |
Target: 5'- -uGGCGGCgAAGCUgCU-CGACGGCuGGu -3' miRNA: 3'- cgUCGCUGgUUCGA-GAuGUUGUUG-CC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 46605 | 0.67 | 0.924822 |
Target: 5'- aGCGGgacgcacguucuCGACCAGGC---GCAGCAucuGCGGg -3' miRNA: 3'- -CGUC------------GCUGGUUCGagaUGUUGU---UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 11065 | 0.66 | 0.928989 |
Target: 5'- aGCAGCGAauucggaCAuGCgaacuucgccccguUCgagGCGACGACGGa -3' miRNA: 3'- -CGUCGCUg------GUuCG--------------AGa--UGUUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 23839 | 0.66 | 0.93073 |
Target: 5'- uGCGGUcaccgaccuGACCAAGCacaUCaACAACA-CGGu -3' miRNA: 3'- -CGUCG---------CUGGUUCG---AGaUGUUGUuGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 21586 | 0.66 | 0.935241 |
Target: 5'- gGCGGUGagucgauGCCAGGCgucaacgaggcgaUCU-CGGCGGCGGu -3' miRNA: 3'- -CGUCGC-------UGGUUCG-------------AGAuGUUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 44357 | 0.66 | 0.936339 |
Target: 5'- --cGUGGCCGAcCUCuUGCAGCGgucACGGg -3' miRNA: 3'- cguCGCUGGUUcGAG-AUGUUGU---UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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