Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18681 | 5' | -49.8 | NC_004682.1 | + | 48988 | 0.67 | 0.912109 |
Target: 5'- cGCGGCGuucgUCAAGgaCUGCGACAAgCGc -3' miRNA: 3'- -CGUCGCu---GGUUCgaGAUGUUGUU-GCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 30804 | 0.67 | 0.912109 |
Target: 5'- aGCGGCGACU-GGCU--GguGCGGCGGu -3' miRNA: 3'- -CGUCGCUGGuUCGAgaUguUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 34836 | 0.67 | 0.912109 |
Target: 5'- gGCGGCGuuCGcgcacggcaacGGCagCUACGACAucACGGg -3' miRNA: 3'- -CGUCGCugGU-----------UCGa-GAUGUUGU--UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 45357 | 0.67 | 0.905307 |
Target: 5'- aGCAGU-ACCAAcGCUucCUGCAGaAGCGGg -3' miRNA: 3'- -CGUCGcUGGUU-CGA--GAUGUUgUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 8918 | 0.67 | 0.898211 |
Target: 5'- cGCAuGuCGGCUAuccccGGCUCUACAuCGACGc -3' miRNA: 3'- -CGU-C-GCUGGU-----UCGAGAUGUuGUUGCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 7310 | 0.67 | 0.898211 |
Target: 5'- aCAGCGugaACCGAGC-CUguuccagcgucgGCAugAACGGc -3' miRNA: 3'- cGUCGC---UGGUUCGaGA------------UGUugUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 21921 | 0.67 | 0.897486 |
Target: 5'- aGUAGUGGaagucgcCCAGGCccgucucgcuggUCUcCAGCAGCGGg -3' miRNA: 3'- -CGUCGCU-------GGUUCG------------AGAuGUUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 29275 | 0.68 | 0.890826 |
Target: 5'- gGCAuCGGCCucGCUCUggagguccGCAGCGAUGa -3' miRNA: 3'- -CGUcGCUGGuuCGAGA--------UGUUGUUGCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 31955 | 0.68 | 0.890826 |
Target: 5'- cCAGCGAguCCcAGCUCgccaugaaGGCGACGGc -3' miRNA: 3'- cGUCGCU--GGuUCGAGaug-----UUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 3276 | 0.68 | 0.883156 |
Target: 5'- gGCGGCGguGCCAGccauacGUUCaccuucgGCAGCGGCGGc -3' miRNA: 3'- -CGUCGC--UGGUU------CGAGa------UGUUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 24538 | 0.68 | 0.875206 |
Target: 5'- gGCuGgGGCUucaucAGCUCUACGucgaACGGCGGc -3' miRNA: 3'- -CGuCgCUGGu----UCGAGAUGU----UGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 47051 | 0.68 | 0.875206 |
Target: 5'- aGCAGgucGCCAAGCUgCUGCGcCAcGCGGa -3' miRNA: 3'- -CGUCgc-UGGUUCGA-GAUGUuGU-UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 46271 | 0.68 | 0.866985 |
Target: 5'- cCAGCGcCCGAGCgaacGCGGCGuuGCGGc -3' miRNA: 3'- cGUCGCuGGUUCGaga-UGUUGU--UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 41757 | 0.68 | 0.866985 |
Target: 5'- aCAGCGACCGGGagagCUGgGugAACGc -3' miRNA: 3'- cGUCGCUGGUUCga--GAUgUugUUGCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 28319 | 0.68 | 0.861925 |
Target: 5'- cGgAGCGACC---CUCUACAucacccgagcccccuGCGACGGc -3' miRNA: 3'- -CgUCGCUGGuucGAGAUGU---------------UGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 7087 | 0.68 | 0.8585 |
Target: 5'- cGCAuGUGAUCGGGC-CUACGugGGCa- -3' miRNA: 3'- -CGU-CGCUGGUUCGaGAUGUugUUGcc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 35629 | 0.68 | 0.8585 |
Target: 5'- gGCGGUGuCgGGGCcaaCUACAGCAAcCGGu -3' miRNA: 3'- -CGUCGCuGgUUCGa--GAUGUUGUU-GCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 24838 | 0.69 | 0.840769 |
Target: 5'- uCGGCcuggaaGACCGcuccgauGCUCUACAAgAACGGu -3' miRNA: 3'- cGUCG------CUGGUu------CGAGAUGUUgUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 46892 | 0.69 | 0.840769 |
Target: 5'- --cGCGAUCAAGUggUCUGCccggauCGACGGg -3' miRNA: 3'- cguCGCUGGUUCG--AGAUGuu----GUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 19962 | 0.69 | 0.831542 |
Target: 5'- aCAGCGGCCAucgcccgcaacGCgaCUGCcGCGACGGu -3' miRNA: 3'- cGUCGCUGGUu----------CGa-GAUGuUGUUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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