miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 5' -49.8 NC_004682.1 + 3155 0.72 0.683926
Target:  5'- aGCAGCcGCCAA-CUCggGCAccACGGCGGg -3'
miRNA:   3'- -CGUCGcUGGUUcGAGa-UGU--UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 3276 0.68 0.883156
Target:  5'- gGCGGCGguGCCAGccauacGUUCaccuucgGCAGCGGCGGc -3'
miRNA:   3'- -CGUCGC--UGGUU------CGAGa------UGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 4423 0.66 0.946664
Target:  5'- gGCGGUcACCAGcGC-CUugGugAGCGGc -3'
miRNA:   3'- -CGUCGcUGGUU-CGaGAugUugUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 5924 0.67 0.912109
Target:  5'- -gGGCGuuCCAgcAGCUCgACGGCAAgGGc -3'
miRNA:   3'- cgUCGCu-GGU--UCGAGaUGUUGUUgCC- -5'
18681 5' -49.8 NC_004682.1 + 6130 0.72 0.695232
Target:  5'- cGCGGCcuacGCCAAgGCg-UACGACGGCGGg -3'
miRNA:   3'- -CGUCGc---UGGUU-CGagAUGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 6956 0.69 0.822088
Target:  5'- aGCGGaCGcuguCCAAGCUCgauCAguugggacACAACGGa -3'
miRNA:   3'- -CGUC-GCu---GGUUCGAGau-GU--------UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 7087 0.68 0.8585
Target:  5'- cGCAuGUGAUCGGGC-CUACGugGGCa- -3'
miRNA:   3'- -CGU-CGCUGGUUCGaGAUGUugUUGcc -5'
18681 5' -49.8 NC_004682.1 + 7310 0.67 0.898211
Target:  5'- aCAGCGugaACCGAGC-CUguuccagcgucgGCAugAACGGc -3'
miRNA:   3'- cGUCGC---UGGUUCGaGA------------UGUugUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 7667 0.74 0.558579
Target:  5'- uGCAG-GACCGGGCggCgagauCAACGACGGu -3'
miRNA:   3'- -CGUCgCUGGUUCGa-Gau---GUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 7841 0.66 0.941649
Target:  5'- gGCGGuCGACaccggcauGCUCUACGACGcccUGGa -3'
miRNA:   3'- -CGUC-GCUGguu-----CGAGAUGUUGUu--GCC- -5'
18681 5' -49.8 NC_004682.1 + 8512 0.71 0.717634
Target:  5'- cGCGGUGAUCGAGCaagaggUCUuCcACGACGGc -3'
miRNA:   3'- -CGUCGCUGGUUCG------AGAuGuUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 8918 0.67 0.898211
Target:  5'- cGCAuGuCGGCUAuccccGGCUCUACAuCGACGc -3'
miRNA:   3'- -CGU-C-GCUGGU-----UCGAGAUGUuGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 8955 0.7 0.802543
Target:  5'- cGCAGCGcGCCAggAGCUUgaggGCuucggcuCGGCGGg -3'
miRNA:   3'- -CGUCGC-UGGU--UCGAGa---UGuu-----GUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 9810 0.66 0.946664
Target:  5'- uCAGCcgaGGCCGGGUUCUcagacgagaACGACAgguaguACGGg -3'
miRNA:   3'- cGUCG---CUGGUUCGAGA---------UGUUGU------UGCC- -5'
18681 5' -49.8 NC_004682.1 + 9953 1.13 0.001828
Target:  5'- cGCAGCGACCAAGCUCUACAACAACGGc -3'
miRNA:   3'- -CGUCGCUGGUUCGAGAUGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 11065 0.66 0.928989
Target:  5'- aGCAGCGAauucggaCAuGCgaacuucgccccguUCgagGCGACGACGGa -3'
miRNA:   3'- -CGUCGCUg------GUuCG--------------AGa--UGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 12566 0.72 0.683926
Target:  5'- aCAGCGACCAuguuGUgCUGCcACAGCGa -3'
miRNA:   3'- cGUCGCUGGUu---CGaGAUGuUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 14715 0.71 0.750516
Target:  5'- cGUGGCGAcaugcCCGAGUUCgGCuuCGACGGu -3'
miRNA:   3'- -CGUCGCU-----GGUUCGAGaUGuuGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 16661 0.71 0.728703
Target:  5'- cGCugcGCGGCaugcGCUCggGCGGCAGCGGu -3'
miRNA:   3'- -CGu--CGCUGguu-CGAGa-UGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 17672 0.66 0.946664
Target:  5'- cGUAGCGACCAugaUCggcACGACGcugaccACGGc -3'
miRNA:   3'- -CGUCGCUGGUucgAGa--UGUUGU------UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.