miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 5' -49.8 NC_004682.1 + 17722 0.66 0.951386
Target:  5'- -gGGCGucaggauguuGCCGAGCgUCUGCAgguugggcaccaGCAGCGa -3'
miRNA:   3'- cgUCGC----------UGGUUCG-AGAUGU------------UGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 19962 0.69 0.831542
Target:  5'- aCAGCGGCCAucgcccgcaacGCgaCUGCcGCGACGGu -3'
miRNA:   3'- cGUCGCUGGUu----------CGa-GAUGuUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 20948 0.66 0.951386
Target:  5'- uGCAGCu-CCGGGC---GCAGgAACGGg -3'
miRNA:   3'- -CGUCGcuGGUUCGagaUGUUgUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 21586 0.66 0.935241
Target:  5'- gGCGGUGagucgauGCCAGGCgucaacgaggcgaUCU-CGGCGGCGGu -3'
miRNA:   3'- -CGUCGC-------UGGUUCG-------------AGAuGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 21921 0.67 0.897486
Target:  5'- aGUAGUGGaagucgcCCAGGCccgucucgcuggUCUcCAGCAGCGGg -3'
miRNA:   3'- -CGUCGCU-------GGUUCG------------AGAuGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 22743 0.66 0.946664
Target:  5'- cGCAGCcgcugGACCuGAGCgagCUguucgaugACGACAACGa -3'
miRNA:   3'- -CGUCG-----CUGG-UUCGa--GA--------UGUUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 23626 0.69 0.822088
Target:  5'- gGCGGUGGCCAAGaucaUCgACAcccugacCGACGGg -3'
miRNA:   3'- -CGUCGCUGGUUCg---AGaUGUu------GUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 23839 0.66 0.93073
Target:  5'- uGCGGUcaccgaccuGACCAAGCacaUCaACAACA-CGGu -3'
miRNA:   3'- -CGUCG---------CUGGUUCG---AGaUGUUGUuGCC- -5'
18681 5' -49.8 NC_004682.1 + 24538 0.68 0.875206
Target:  5'- gGCuGgGGCUucaucAGCUCUACGucgaACGGCGGc -3'
miRNA:   3'- -CGuCgCUGGu----UCGAGAUGU----UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 24838 0.69 0.840769
Target:  5'- uCGGCcuggaaGACCGcuccgauGCUCUACAAgAACGGu -3'
miRNA:   3'- cGUCG------CUGGUu------CGAGAUGUUgUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 25197 0.67 0.917978
Target:  5'- aCAGCGuCCAAGCUggcgaggCUGuCGGCAccguACGGc -3'
miRNA:   3'- cGUCGCuGGUUCGA-------GAU-GUUGU----UGCC- -5'
18681 5' -49.8 NC_004682.1 + 25709 0.67 0.918615
Target:  5'- -gAGCGcCCGgacAGCgCUACuuCGACGGg -3'
miRNA:   3'- cgUCGCuGGU---UCGaGAUGuuGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 26373 0.66 0.936339
Target:  5'- cGCAGCGGCCuccuGGaUCUGCuuccACGucgcCGGg -3'
miRNA:   3'- -CGUCGCUGGu---UCgAGAUGu---UGUu---GCC- -5'
18681 5' -49.8 NC_004682.1 + 26736 0.67 0.924822
Target:  5'- -uGGCGGCgAAGCUgCU-CGACGGCuGGu -3'
miRNA:   3'- cgUCGCUGgUUCGA-GAuGUUGUUG-CC- -5'
18681 5' -49.8 NC_004682.1 + 27555 0.7 0.782226
Target:  5'- gGCGGCGACacuGGCgCUGCGGCAGa-- -3'
miRNA:   3'- -CGUCGCUGgu-UCGaGAUGUUGUUgcc -5'
18681 5' -49.8 NC_004682.1 + 27645 0.75 0.503347
Target:  5'- -aGGCGaACCAgcGGCUCUGCcGCAGCGc -3'
miRNA:   3'- cgUCGC-UGGU--UCGAGAUGuUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 27773 0.73 0.638287
Target:  5'- aGUuGCGGCCAGGagccACAGCGGCGGg -3'
miRNA:   3'- -CGuCGCUGGUUCgagaUGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 28081 0.66 0.946664
Target:  5'- uCGGCGACgaagacgcuCGGGCguggCUGCucGCGGCGGc -3'
miRNA:   3'- cGUCGCUG---------GUUCGa---GAUGu-UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 28319 0.68 0.861925
Target:  5'- cGgAGCGACC---CUCUACAucacccgagcccccuGCGACGGc -3'
miRNA:   3'- -CgUCGCUGGuucGAGAUGU---------------UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 28687 0.66 0.946176
Target:  5'- uCGGCGuGCCGAuGCcgcccacUCgcgGCGGCGGCGGg -3'
miRNA:   3'- cGUCGC-UGGUU-CG-------AGa--UGUUGUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.