Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18681 | 5' | -49.8 | NC_004682.1 | + | 29275 | 0.68 | 0.890826 |
Target: 5'- gGCAuCGGCCucGCUCUggagguccGCAGCGAUGa -3' miRNA: 3'- -CGUcGCUGGuuCGAGA--------UGUUGUUGCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 30461 | 0.72 | 0.680523 |
Target: 5'- uGCAGCGGCUGAGCgccaagCUcCAGCGcgaggcgagccagaACGGg -3' miRNA: 3'- -CGUCGCUGGUUCGa-----GAuGUUGU--------------UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 30804 | 0.67 | 0.912109 |
Target: 5'- aGCGGCGACU-GGCU--GguGCGGCGGu -3' miRNA: 3'- -CGUCGCUGGuUCGAgaUguUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 31235 | 0.71 | 0.728703 |
Target: 5'- aGCGG-GAUC-AGCuUCUGCAGCAgACGGg -3' miRNA: 3'- -CGUCgCUGGuUCG-AGAUGUUGU-UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 31786 | 0.76 | 0.440439 |
Target: 5'- cGgAGaCGACCGGGCuggacaUCUACAGCGACGa -3' miRNA: 3'- -CgUC-GCUGGUUCG------AGAUGUUGUUGCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 31955 | 0.68 | 0.890826 |
Target: 5'- cCAGCGAguCCcAGCUCgccaugaaGGCGACGGc -3' miRNA: 3'- cGUCGCU--GGuUCGAGaug-----UUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 33562 | 0.77 | 0.391586 |
Target: 5'- cGCAGCaGGCCGcuGGCg--GCGGCAACGGc -3' miRNA: 3'- -CGUCG-CUGGU--UCGagaUGUUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 33996 | 0.72 | 0.649735 |
Target: 5'- aGCAGUGGCCGauggagucgaugAGgaCUGCGcCAACGGc -3' miRNA: 3'- -CGUCGCUGGU------------UCgaGAUGUuGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 34836 | 0.67 | 0.912109 |
Target: 5'- gGCGGCGuuCGcgcacggcaacGGCagCUACGACAucACGGg -3' miRNA: 3'- -CGUCGCugGU-----------UCGa-GAUGUUGU--UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 34851 | 0.69 | 0.812418 |
Target: 5'- uGCAGaCGACCucguuGGGCUCcccgacguuggACAGCGACGa -3' miRNA: 3'- -CGUC-GCUGG-----UUCGAGa----------UGUUGUUGCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 35629 | 0.68 | 0.8585 |
Target: 5'- gGCGGUGuCgGGGCcaaCUACAGCAAcCGGu -3' miRNA: 3'- -CGUCGCuGgUUCGa--GAUGUUGUU-GCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 36014 | 0.74 | 0.547373 |
Target: 5'- uGCGGCGGCgAGGCcgcaaagcaguUCUACcGCAACGa -3' miRNA: 3'- -CGUCGCUGgUUCG-----------AGAUGuUGUUGCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 36617 | 0.71 | 0.739669 |
Target: 5'- gGCGGCGAguCCAAGCcUCccauCAACGcgGCGGu -3' miRNA: 3'- -CGUCGCU--GGUUCG-AGau--GUUGU--UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 38518 | 0.72 | 0.661165 |
Target: 5'- cGCGaUGAUCGGGCUCUGCcGCAGCa- -3' miRNA: 3'- -CGUcGCUGGUUCGAGAUGuUGUUGcc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 38629 | 0.79 | 0.30429 |
Target: 5'- cCGGUGACCGgccacGGCUCUACAACAcgcucgcucugcuGCGGc -3' miRNA: 3'- cGUCGCUGGU-----UCGAGAUGUUGU-------------UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 39241 | 0.75 | 0.514219 |
Target: 5'- cCGGCuGugCAGGUUCUugGugAACGGa -3' miRNA: 3'- cGUCG-CugGUUCGAGAugUugUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 40417 | 0.7 | 0.771808 |
Target: 5'- cGCGGUGACCGcGCUCgacGCGgugaACcACGGu -3' miRNA: 3'- -CGUCGCUGGUuCGAGa--UGU----UGuUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 41757 | 0.68 | 0.866985 |
Target: 5'- aCAGCGACCGGGagagCUGgGugAACGc -3' miRNA: 3'- cGUCGCUGGUUCga--GAUgUugUUGCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 44357 | 0.66 | 0.936339 |
Target: 5'- --cGUGGCCGAcCUCuUGCAGCGgucACGGg -3' miRNA: 3'- cguCGCUGGUUcGAG-AUGUUGU---UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 45357 | 0.67 | 0.905307 |
Target: 5'- aGCAGU-ACCAAcGCUucCUGCAGaAGCGGg -3' miRNA: 3'- -CGUCGcUGGUU-CGA--GAUGUUgUUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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