miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 5' -49.8 NC_004682.1 + 48988 0.67 0.912109
Target:  5'- cGCGGCGuucgUCAAGgaCUGCGACAAgCGc -3'
miRNA:   3'- -CGUCGCu---GGUUCgaGAUGUUGUU-GCc -5'
18681 5' -49.8 NC_004682.1 + 48614 0.71 0.750516
Target:  5'- aGCcuGCGcucGCUgcGGGCUCUGCAuCAACGGa -3'
miRNA:   3'- -CGu-CGC---UGG--UUCGAGAUGUuGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 47419 0.69 0.812418
Target:  5'- gGCAGUGAUCgAAGCgaagcaCUACGaggagacgcgGCAGCGGc -3'
miRNA:   3'- -CGUCGCUGG-UUCGa-----GAUGU----------UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 47051 0.68 0.875206
Target:  5'- aGCAGgucGCCAAGCUgCUGCGcCAcGCGGa -3'
miRNA:   3'- -CGUCgc-UGGUUCGA-GAUGUuGU-UGCC- -5'
18681 5' -49.8 NC_004682.1 + 46892 0.69 0.840769
Target:  5'- --cGCGAUCAAGUggUCUGCccggauCGACGGg -3'
miRNA:   3'- cguCGCUGGUUCG--AGAUGuu----GUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 46605 0.67 0.924822
Target:  5'- aGCGGgacgcacguucuCGACCAGGC---GCAGCAucuGCGGg -3'
miRNA:   3'- -CGUC------------GCUGGUUCGagaUGUUGU---UGCC- -5'
18681 5' -49.8 NC_004682.1 + 46415 0.69 0.831542
Target:  5'- gGUAGagGACCAAgGCUCcGCucuCAGCGGa -3'
miRNA:   3'- -CGUCg-CUGGUU-CGAGaUGuu-GUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 46271 0.68 0.866985
Target:  5'- cCAGCGcCCGAGCgaacGCGGCGuuGCGGc -3'
miRNA:   3'- cGUCGCuGGUUCGaga-UGUUGU--UGCC- -5'
18681 5' -49.8 NC_004682.1 + 46140 0.71 0.739669
Target:  5'- uGCGGaGACCAGcacuGCcgCUGCGACGACGa -3'
miRNA:   3'- -CGUCgCUGGUU----CGa-GAUGUUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 46136 0.76 0.43039
Target:  5'- gGCAGCG-CCGAGCg--ACAGCAGCa- -3'
miRNA:   3'- -CGUCGCuGGUUCGagaUGUUGUUGcc -5'
18681 5' -49.8 NC_004682.1 + 45968 0.66 0.951386
Target:  5'- uGCAGCaucGAgCGgaAGCUCUcCAGC-GCGGa -3'
miRNA:   3'- -CGUCG---CUgGU--UCGAGAuGUUGuUGCC- -5'
18681 5' -49.8 NC_004682.1 + 45357 0.67 0.905307
Target:  5'- aGCAGU-ACCAAcGCUucCUGCAGaAGCGGg -3'
miRNA:   3'- -CGUCGcUGGUU-CGA--GAUGUUgUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 44357 0.66 0.936339
Target:  5'- --cGUGGCCGAcCUCuUGCAGCGgucACGGg -3'
miRNA:   3'- cguCGCUGGUUcGAG-AUGUUGU---UGCC- -5'
18681 5' -49.8 NC_004682.1 + 41757 0.68 0.866985
Target:  5'- aCAGCGACCGGGagagCUGgGugAACGc -3'
miRNA:   3'- cGUCGCUGGUUCga--GAUgUugUUGCc -5'
18681 5' -49.8 NC_004682.1 + 40417 0.7 0.771808
Target:  5'- cGCGGUGACCGcGCUCgacGCGgugaACcACGGu -3'
miRNA:   3'- -CGUCGCUGGUuCGAGa--UGU----UGuUGCC- -5'
18681 5' -49.8 NC_004682.1 + 39241 0.75 0.514219
Target:  5'- cCGGCuGugCAGGUUCUugGugAACGGa -3'
miRNA:   3'- cGUCG-CugGUUCGAGAugUugUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 38629 0.79 0.30429
Target:  5'- cCGGUGACCGgccacGGCUCUACAACAcgcucgcucugcuGCGGc -3'
miRNA:   3'- cGUCGCUGGU-----UCGAGAUGUUGU-------------UGCC- -5'
18681 5' -49.8 NC_004682.1 + 38518 0.72 0.661165
Target:  5'- cGCGaUGAUCGGGCUCUGCcGCAGCa- -3'
miRNA:   3'- -CGUcGCUGGUUCGAGAUGuUGUUGcc -5'
18681 5' -49.8 NC_004682.1 + 36617 0.71 0.739669
Target:  5'- gGCGGCGAguCCAAGCcUCccauCAACGcgGCGGu -3'
miRNA:   3'- -CGUCGCU--GGUUCG-AGau--GUUGU--UGCC- -5'
18681 5' -49.8 NC_004682.1 + 36014 0.74 0.547373
Target:  5'- uGCGGCGGCgAGGCcgcaaagcaguUCUACcGCAACGa -3'
miRNA:   3'- -CGUCGCUGgUUCG-----------AGAUGuUGUUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.