miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 5' -49.8 NC_004682.1 + 35629 0.68 0.8585
Target:  5'- gGCGGUGuCgGGGCcaaCUACAGCAAcCGGu -3'
miRNA:   3'- -CGUCGCuGgUUCGa--GAUGUUGUU-GCC- -5'
18681 5' -49.8 NC_004682.1 + 34851 0.69 0.812418
Target:  5'- uGCAGaCGACCucguuGGGCUCcccgacguuggACAGCGACGa -3'
miRNA:   3'- -CGUC-GCUGG-----UUCGAGa----------UGUUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 34836 0.67 0.912109
Target:  5'- gGCGGCGuuCGcgcacggcaacGGCagCUACGACAucACGGg -3'
miRNA:   3'- -CGUCGCugGU-----------UCGa-GAUGUUGU--UGCC- -5'
18681 5' -49.8 NC_004682.1 + 33996 0.72 0.649735
Target:  5'- aGCAGUGGCCGauggagucgaugAGgaCUGCGcCAACGGc -3'
miRNA:   3'- -CGUCGCUGGU------------UCgaGAUGUuGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 33562 0.77 0.391586
Target:  5'- cGCAGCaGGCCGcuGGCg--GCGGCAACGGc -3'
miRNA:   3'- -CGUCG-CUGGU--UCGagaUGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 31955 0.68 0.890826
Target:  5'- cCAGCGAguCCcAGCUCgccaugaaGGCGACGGc -3'
miRNA:   3'- cGUCGCU--GGuUCGAGaug-----UUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 31786 0.76 0.440439
Target:  5'- cGgAGaCGACCGGGCuggacaUCUACAGCGACGa -3'
miRNA:   3'- -CgUC-GCUGGUUCG------AGAUGUUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 31235 0.71 0.728703
Target:  5'- aGCGG-GAUC-AGCuUCUGCAGCAgACGGg -3'
miRNA:   3'- -CGUCgCUGGuUCG-AGAUGUUGU-UGCC- -5'
18681 5' -49.8 NC_004682.1 + 30804 0.67 0.912109
Target:  5'- aGCGGCGACU-GGCU--GguGCGGCGGu -3'
miRNA:   3'- -CGUCGCUGGuUCGAgaUguUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 30461 0.72 0.680523
Target:  5'- uGCAGCGGCUGAGCgccaagCUcCAGCGcgaggcgagccagaACGGg -3'
miRNA:   3'- -CGUCGCUGGUUCGa-----GAuGUUGU--------------UGCC- -5'
18681 5' -49.8 NC_004682.1 + 29275 0.68 0.890826
Target:  5'- gGCAuCGGCCucGCUCUggagguccGCAGCGAUGa -3'
miRNA:   3'- -CGUcGCUGGuuCGAGA--------UGUUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 28687 0.66 0.946176
Target:  5'- uCGGCGuGCCGAuGCcgcccacUCgcgGCGGCGGCGGg -3'
miRNA:   3'- cGUCGC-UGGUU-CG-------AGa--UGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 28319 0.68 0.861925
Target:  5'- cGgAGCGACC---CUCUACAucacccgagcccccuGCGACGGc -3'
miRNA:   3'- -CgUCGCUGGuucGAGAUGU---------------UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 28081 0.66 0.946664
Target:  5'- uCGGCGACgaagacgcuCGGGCguggCUGCucGCGGCGGc -3'
miRNA:   3'- cGUCGCUG---------GUUCGa---GAUGu-UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 27773 0.73 0.638287
Target:  5'- aGUuGCGGCCAGGagccACAGCGGCGGg -3'
miRNA:   3'- -CGuCGCUGGUUCgagaUGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 27645 0.75 0.503347
Target:  5'- -aGGCGaACCAgcGGCUCUGCcGCAGCGc -3'
miRNA:   3'- cgUCGC-UGGU--UCGAGAUGuUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 27555 0.7 0.782226
Target:  5'- gGCGGCGACacuGGCgCUGCGGCAGa-- -3'
miRNA:   3'- -CGUCGCUGgu-UCGaGAUGUUGUUgcc -5'
18681 5' -49.8 NC_004682.1 + 26736 0.67 0.924822
Target:  5'- -uGGCGGCgAAGCUgCU-CGACGGCuGGu -3'
miRNA:   3'- cgUCGCUGgUUCGA-GAuGUUGUUG-CC- -5'
18681 5' -49.8 NC_004682.1 + 26373 0.66 0.936339
Target:  5'- cGCAGCGGCCuccuGGaUCUGCuuccACGucgcCGGg -3'
miRNA:   3'- -CGUCGCUGGu---UCgAGAUGu---UGUu---GCC- -5'
18681 5' -49.8 NC_004682.1 + 25709 0.67 0.918615
Target:  5'- -gAGCGcCCGgacAGCgCUACuuCGACGGg -3'
miRNA:   3'- cgUCGCuGGU---UCGaGAUGuuGUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.