miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 5' -49.8 NC_004682.1 + 24538 0.68 0.875206
Target:  5'- gGCuGgGGCUucaucAGCUCUACGucgaACGGCGGc -3'
miRNA:   3'- -CGuCgCUGGu----UCGAGAUGU----UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 34851 0.69 0.812418
Target:  5'- uGCAGaCGACCucguuGGGCUCcccgacguuggACAGCGACGa -3'
miRNA:   3'- -CGUC-GCUGG-----UUCGAGa----------UGUUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 23626 0.69 0.822088
Target:  5'- gGCGGUGGCCAAGaucaUCgACAcccugacCGACGGg -3'
miRNA:   3'- -CGUCGCUGGUUCg---AGaUGUu------GUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 19962 0.69 0.831542
Target:  5'- aCAGCGGCCAucgcccgcaacGCgaCUGCcGCGACGGu -3'
miRNA:   3'- cGUCGCUGGUu----------CGa-GAUGuUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 46415 0.69 0.831542
Target:  5'- gGUAGagGACCAAgGCUCcGCucuCAGCGGa -3'
miRNA:   3'- -CGUCg-CUGGUU-CGAGaUGuu-GUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 24838 0.69 0.840769
Target:  5'- uCGGCcuggaaGACCGcuccgauGCUCUACAAgAACGGu -3'
miRNA:   3'- cGUCG------CUGGUu------CGAGAUGUUgUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 7087 0.68 0.8585
Target:  5'- cGCAuGUGAUCGGGC-CUACGugGGCa- -3'
miRNA:   3'- -CGU-CGCUGGUUCGaGAUGUugUUGcc -5'
18681 5' -49.8 NC_004682.1 + 41757 0.68 0.866985
Target:  5'- aCAGCGACCGGGagagCUGgGugAACGc -3'
miRNA:   3'- cGUCGCUGGUUCga--GAUgUugUUGCc -5'
18681 5' -49.8 NC_004682.1 + 46271 0.68 0.866985
Target:  5'- cCAGCGcCCGAGCgaacGCGGCGuuGCGGc -3'
miRNA:   3'- cGUCGCuGGUUCGaga-UGUUGU--UGCC- -5'
18681 5' -49.8 NC_004682.1 + 8955 0.7 0.802543
Target:  5'- cGCAGCGcGCCAggAGCUUgaggGCuucggcuCGGCGGg -3'
miRNA:   3'- -CGUCGC-UGGU--UCGAGa---UGuu-----GUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 27555 0.7 0.782226
Target:  5'- gGCGGCGACacuGGCgCUGCGGCAGa-- -3'
miRNA:   3'- -CGUCGCUGgu-UCGaGAUGUUGUUgcc -5'
18681 5' -49.8 NC_004682.1 + 14715 0.71 0.750516
Target:  5'- cGUGGCGAcaugcCCGAGUUCgGCuuCGACGGu -3'
miRNA:   3'- -CGUCGCU-----GGUUCGAGaUGuuGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 46136 0.76 0.43039
Target:  5'- gGCAGCG-CCGAGCg--ACAGCAGCa- -3'
miRNA:   3'- -CGUCGCuGGUUCGagaUGUUGUUGcc -5'
18681 5' -49.8 NC_004682.1 + 7667 0.74 0.558579
Target:  5'- uGCAG-GACCGGGCggCgagauCAACGACGGu -3'
miRNA:   3'- -CGUCgCUGGUUCGa-Gau---GUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 38518 0.72 0.661165
Target:  5'- cGCGaUGAUCGGGCUCUGCcGCAGCa- -3'
miRNA:   3'- -CGUcGCUGGUUCGAGAUGuUGUUGcc -5'
18681 5' -49.8 NC_004682.1 + 3155 0.72 0.683926
Target:  5'- aGCAGCcGCCAA-CUCggGCAccACGGCGGg -3'
miRNA:   3'- -CGUCGcUGGUUcGAGa-UGU--UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 6130 0.72 0.695232
Target:  5'- cGCGGCcuacGCCAAgGCg-UACGACGGCGGg -3'
miRNA:   3'- -CGUCGc---UGGUU-CGagAUGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 8512 0.71 0.717634
Target:  5'- cGCGGUGAUCGAGCaagaggUCUuCcACGACGGc -3'
miRNA:   3'- -CGUCGCUGGUUCG------AGAuGuUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 31235 0.71 0.728703
Target:  5'- aGCGG-GAUC-AGCuUCUGCAGCAgACGGg -3'
miRNA:   3'- -CGUCgCUGGuUCG-AGAUGUUGU-UGCC- -5'
18681 5' -49.8 NC_004682.1 + 16661 0.71 0.728703
Target:  5'- cGCugcGCGGCaugcGCUCggGCGGCAGCGGu -3'
miRNA:   3'- -CGu--CGCUGguu-CGAGa-UGUUGUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.