Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18681 | 5' | -49.8 | NC_004682.1 | + | 31235 | 0.71 | 0.728703 |
Target: 5'- aGCGG-GAUC-AGCuUCUGCAGCAgACGGg -3' miRNA: 3'- -CGUCgCUGGuUCG-AGAUGUUGU-UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 8512 | 0.71 | 0.717634 |
Target: 5'- cGCGGUGAUCGAGCaagaggUCUuCcACGACGGc -3' miRNA: 3'- -CGUCGCUGGUUCG------AGAuGuUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 6130 | 0.72 | 0.695232 |
Target: 5'- cGCGGCcuacGCCAAgGCg-UACGACGGCGGg -3' miRNA: 3'- -CGUCGc---UGGUU-CGagAUGUUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 3155 | 0.72 | 0.683926 |
Target: 5'- aGCAGCcGCCAA-CUCggGCAccACGGCGGg -3' miRNA: 3'- -CGUCGcUGGUUcGAGa-UGU--UGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 38518 | 0.72 | 0.661165 |
Target: 5'- cGCGaUGAUCGGGCUCUGCcGCAGCa- -3' miRNA: 3'- -CGUcGCUGGUUCGAGAUGuUGUUGcc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 7667 | 0.74 | 0.558579 |
Target: 5'- uGCAG-GACCGGGCggCgagauCAACGACGGu -3' miRNA: 3'- -CGUCgCUGGUUCGa-Gau---GUUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 46136 | 0.76 | 0.43039 |
Target: 5'- gGCAGCG-CCGAGCg--ACAGCAGCa- -3' miRNA: 3'- -CGUCGCuGGUUCGagaUGUUGUUGcc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 9953 | 1.13 | 0.001828 |
Target: 5'- cGCAGCGACCAAGCUCUACAACAACGGc -3' miRNA: 3'- -CGUCGCUGGUUCGAGAUGUUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 16661 | 0.71 | 0.728703 |
Target: 5'- cGCugcGCGGCaugcGCUCggGCGGCAGCGGu -3' miRNA: 3'- -CGu--CGCUGguu-CGAGa-UGUUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 14715 | 0.71 | 0.750516 |
Target: 5'- cGUGGCGAcaugcCCGAGUUCgGCuuCGACGGu -3' miRNA: 3'- -CGUCGCU-----GGUUCGAGaUGuuGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 7087 | 0.68 | 0.8585 |
Target: 5'- cGCAuGUGAUCGGGC-CUACGugGGCa- -3' miRNA: 3'- -CGU-CGCUGGUUCGaGAUGUugUUGcc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 24838 | 0.69 | 0.840769 |
Target: 5'- uCGGCcuggaaGACCGcuccgauGCUCUACAAgAACGGu -3' miRNA: 3'- cGUCG------CUGGUu------CGAGAUGUUgUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 46415 | 0.69 | 0.831542 |
Target: 5'- gGUAGagGACCAAgGCUCcGCucuCAGCGGa -3' miRNA: 3'- -CGUCg-CUGGUU-CGAGaUGuu-GUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 19962 | 0.69 | 0.831542 |
Target: 5'- aCAGCGGCCAucgcccgcaacGCgaCUGCcGCGACGGu -3' miRNA: 3'- cGUCGCUGGUu----------CGa-GAUGuUGUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 23626 | 0.69 | 0.822088 |
Target: 5'- gGCGGUGGCCAAGaucaUCgACAcccugacCGACGGg -3' miRNA: 3'- -CGUCGCUGGUUCg---AGaUGUu------GUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 34851 | 0.69 | 0.812418 |
Target: 5'- uGCAGaCGACCucguuGGGCUCcccgacguuggACAGCGACGa -3' miRNA: 3'- -CGUC-GCUGG-----UUCGAGa----------UGUUGUUGCc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 8955 | 0.7 | 0.802543 |
Target: 5'- cGCAGCGcGCCAggAGCUUgaggGCuucggcuCGGCGGg -3' miRNA: 3'- -CGUCGC-UGGU--UCGAGa---UGuu-----GUUGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 27555 | 0.7 | 0.782226 |
Target: 5'- gGCGGCGACacuGGCgCUGCGGCAGa-- -3' miRNA: 3'- -CGUCGCUGgu-UCGaGAUGUUGUUgcc -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 38629 | 0.79 | 0.30429 |
Target: 5'- cCGGUGACCGgccacGGCUCUACAACAcgcucgcucugcuGCGGc -3' miRNA: 3'- cGUCGCUGGU-----UCGAGAUGUUGU-------------UGCC- -5' |
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18681 | 5' | -49.8 | NC_004682.1 | + | 20948 | 0.66 | 0.951386 |
Target: 5'- uGCAGCu-CCGGGC---GCAGgAACGGg -3' miRNA: 3'- -CGUCGcuGGUUCGagaUGUUgUUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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