miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 5' -49.8 NC_004682.1 + 17722 0.66 0.951386
Target:  5'- -gGGCGucaggauguuGCCGAGCgUCUGCAgguugggcaccaGCAGCGa -3'
miRNA:   3'- cgUCGC----------UGGUUCG-AGAUGU------------UGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 6956 0.69 0.822088
Target:  5'- aGCGGaCGcuguCCAAGCUCgauCAguugggacACAACGGa -3'
miRNA:   3'- -CGUC-GCu---GGUUCGAGau-GU--------UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 40417 0.7 0.771808
Target:  5'- cGCGGUGACCGcGCUCgacGCGgugaACcACGGu -3'
miRNA:   3'- -CGUCGCUGGUuCGAGa--UGU----UGuUGCC- -5'
18681 5' -49.8 NC_004682.1 + 38629 0.79 0.30429
Target:  5'- cCGGUGACCGgccacGGCUCUACAACAcgcucgcucugcuGCGGc -3'
miRNA:   3'- cGUCGCUGGU-----UCGAGAUGUUGU-------------UGCC- -5'
18681 5' -49.8 NC_004682.1 + 44357 0.66 0.936339
Target:  5'- --cGUGGCCGAcCUCuUGCAGCGgucACGGg -3'
miRNA:   3'- cguCGCUGGUUcGAG-AUGUUGU---UGCC- -5'
18681 5' -49.8 NC_004682.1 + 11065 0.66 0.928989
Target:  5'- aGCAGCGAauucggaCAuGCgaacuucgccccguUCgagGCGACGACGGa -3'
miRNA:   3'- -CGUCGCUg------GUuCG--------------AGa--UGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 25709 0.67 0.918615
Target:  5'- -gAGCGcCCGgacAGCgCUACuuCGACGGg -3'
miRNA:   3'- cgUCGCuGGU---UCGaGAUGuuGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 48988 0.67 0.912109
Target:  5'- cGCGGCGuucgUCAAGgaCUGCGACAAgCGc -3'
miRNA:   3'- -CGUCGCu---GGUUCgaGAUGUUGUU-GCc -5'
18681 5' -49.8 NC_004682.1 + 7310 0.67 0.898211
Target:  5'- aCAGCGugaACCGAGC-CUguuccagcgucgGCAugAACGGc -3'
miRNA:   3'- cGUCGC---UGGUUCGaGA------------UGUugUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 46892 0.69 0.840769
Target:  5'- --cGCGAUCAAGUggUCUGCccggauCGACGGg -3'
miRNA:   3'- cguCGCUGGUUCG--AGAUGuu----GUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 47051 0.68 0.875206
Target:  5'- aGCAGgucGCCAAGCUgCUGCGcCAcGCGGa -3'
miRNA:   3'- -CGUCgc-UGGUUCGA-GAUGUuGU-UGCC- -5'
18681 5' -49.8 NC_004682.1 + 34836 0.67 0.912109
Target:  5'- gGCGGCGuuCGcgcacggcaacGGCagCUACGACAucACGGg -3'
miRNA:   3'- -CGUCGCugGU-----------UCGa-GAUGUUGU--UGCC- -5'
18681 5' -49.8 NC_004682.1 + 20948 0.66 0.951386
Target:  5'- uGCAGCu-CCGGGC---GCAGgAACGGg -3'
miRNA:   3'- -CGUCGcuGGUUCGagaUGUUgUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 28319 0.68 0.861925
Target:  5'- cGgAGCGACC---CUCUACAucacccgagcccccuGCGACGGc -3'
miRNA:   3'- -CgUCGCUGGuucGAGAUGU---------------UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 4423 0.66 0.946664
Target:  5'- gGCGGUcACCAGcGC-CUugGugAGCGGc -3'
miRNA:   3'- -CGUCGcUGGUU-CGaGAugUugUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 30804 0.67 0.912109
Target:  5'- aGCGGCGACU-GGCU--GguGCGGCGGu -3'
miRNA:   3'- -CGUCGCUGGuUCGAgaUguUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 35629 0.68 0.8585
Target:  5'- gGCGGUGuCgGGGCcaaCUACAGCAAcCGGu -3'
miRNA:   3'- -CGUCGCuGgUUCGa--GAUGUUGUU-GCC- -5'
18681 5' -49.8 NC_004682.1 + 47419 0.69 0.812418
Target:  5'- gGCAGUGAUCgAAGCgaagcaCUACGaggagacgcgGCAGCGGc -3'
miRNA:   3'- -CGUCGCUGG-UUCGa-----GAUGU----------UGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 9810 0.66 0.946664
Target:  5'- uCAGCcgaGGCCGGGUUCUcagacgagaACGACAgguaguACGGg -3'
miRNA:   3'- cGUCG---CUGGUUCGAGA---------UGUUGU------UGCC- -5'
18681 5' -49.8 NC_004682.1 + 26736 0.67 0.924822
Target:  5'- -uGGCGGCgAAGCUgCU-CGACGGCuGGu -3'
miRNA:   3'- cgUCGCUGgUUCGA-GAuGUUGUUG-CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.