miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18681 5' -49.8 NC_004682.1 + 48614 0.71 0.750516
Target:  5'- aGCcuGCGcucGCUgcGGGCUCUGCAuCAACGGa -3'
miRNA:   3'- -CGu-CGC---UGG--UUCGAGAUGUuGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 36014 0.74 0.547373
Target:  5'- uGCGGCGGCgAGGCcgcaaagcaguUCUACcGCAACGa -3'
miRNA:   3'- -CGUCGCUGgUUCG-----------AGAUGuUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 40417 0.7 0.771808
Target:  5'- cGCGGUGACCGcGCUCgacGCGgugaACcACGGu -3'
miRNA:   3'- -CGUCGCUGGUuCGAGa--UGU----UGuUGCC- -5'
18681 5' -49.8 NC_004682.1 + 11065 0.66 0.928989
Target:  5'- aGCAGCGAauucggaCAuGCgaacuucgccccguUCgagGCGACGACGGa -3'
miRNA:   3'- -CGUCGCUg------GUuCG--------------AGa--UGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 27773 0.73 0.638287
Target:  5'- aGUuGCGGCCAGGagccACAGCGGCGGg -3'
miRNA:   3'- -CGuCGCUGGUUCgagaUGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 12566 0.72 0.683926
Target:  5'- aCAGCGACCAuguuGUgCUGCcACAGCGa -3'
miRNA:   3'- cGUCGCUGGUu---CGaGAUGuUGUUGCc -5'
18681 5' -49.8 NC_004682.1 + 39241 0.75 0.514219
Target:  5'- cCGGCuGugCAGGUUCUugGugAACGGa -3'
miRNA:   3'- cGUCG-CugGUUCGAGAugUugUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 33562 0.77 0.391586
Target:  5'- cGCAGCaGGCCGcuGGCg--GCGGCAACGGc -3'
miRNA:   3'- -CGUCG-CUGGU--UCGagaUGUUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 44357 0.66 0.936339
Target:  5'- --cGUGGCCGAcCUCuUGCAGCGgucACGGg -3'
miRNA:   3'- cguCGCUGGUUcGAG-AUGUUGU---UGCC- -5'
18681 5' -49.8 NC_004682.1 + 9810 0.66 0.946664
Target:  5'- uCAGCcgaGGCCGGGUUCUcagacgagaACGACAgguaguACGGg -3'
miRNA:   3'- cGUCG---CUGGUUCGAGA---------UGUUGU------UGCC- -5'
18681 5' -49.8 NC_004682.1 + 25709 0.67 0.918615
Target:  5'- -gAGCGcCCGgacAGCgCUACuuCGACGGg -3'
miRNA:   3'- cgUCGCuGGU---UCGaGAUGuuGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 34836 0.67 0.912109
Target:  5'- gGCGGCGuuCGcgcacggcaacGGCagCUACGACAucACGGg -3'
miRNA:   3'- -CGUCGCugGU-----------UCGa-GAUGUUGU--UGCC- -5'
18681 5' -49.8 NC_004682.1 + 26736 0.67 0.924822
Target:  5'- -uGGCGGCgAAGCUgCU-CGACGGCuGGu -3'
miRNA:   3'- cgUCGCUGgUUCGA-GAuGUUGUUG-CC- -5'
18681 5' -49.8 NC_004682.1 + 8512 0.71 0.717634
Target:  5'- cGCGGUGAUCGAGCaagaggUCUuCcACGACGGc -3'
miRNA:   3'- -CGUCGCUGGUUCG------AGAuGuUGUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 23839 0.66 0.93073
Target:  5'- uGCGGUcaccgaccuGACCAAGCacaUCaACAACA-CGGu -3'
miRNA:   3'- -CGUCG---------CUGGUUCG---AGaUGUUGUuGCC- -5'
18681 5' -49.8 NC_004682.1 + 46605 0.67 0.924822
Target:  5'- aGCGGgacgcacguucuCGACCAGGC---GCAGCAucuGCGGg -3'
miRNA:   3'- -CGUC------------GCUGGUUCGagaUGUUGU---UGCC- -5'
18681 5' -49.8 NC_004682.1 + 25197 0.67 0.917978
Target:  5'- aCAGCGuCCAAGCUggcgaggCUGuCGGCAccguACGGc -3'
miRNA:   3'- cGUCGCuGGUUCGA-------GAU-GUUGU----UGCC- -5'
18681 5' -49.8 NC_004682.1 + 5924 0.67 0.912109
Target:  5'- -gGGCGuuCCAgcAGCUCgACGGCAAgGGc -3'
miRNA:   3'- cgUCGCu-GGU--UCGAGaUGUUGUUgCC- -5'
18681 5' -49.8 NC_004682.1 + 23626 0.69 0.822088
Target:  5'- gGCGGUGGCCAAGaucaUCgACAcccugacCGACGGg -3'
miRNA:   3'- -CGUCGCUGGUUCg---AGaUGUu------GUUGCC- -5'
18681 5' -49.8 NC_004682.1 + 19962 0.69 0.831542
Target:  5'- aCAGCGGCCAucgcccgcaacGCgaCUGCcGCGACGGu -3'
miRNA:   3'- cGUCGCUGGUu----------CGa-GAUGuUGUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.