miRNA display CGI


Results 21 - 37 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18683 5' -62.5 NC_004682.1 + 35061 0.68 0.278509
Target:  5'- uGGAGGUCGaUGACGaguucuGG-GUGGCCg -3'
miRNA:   3'- -CCUCCGGCcACUGCgu----CCgCACCGGg -5'
18683 5' -62.5 NC_004682.1 + 28665 0.68 0.265353
Target:  5'- gGGAGGCCGGau-CGCuccGGUGccaucugGGUCCg -3'
miRNA:   3'- -CCUCCGGCCacuGCGu--CCGCa------CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 7568 0.68 0.258966
Target:  5'- cGAGGCCGGcgGGCGCAu-CGaGGCCg -3'
miRNA:   3'- cCUCCGGCCa-CUGCGUccGCaCCGGg -5'
18683 5' -62.5 NC_004682.1 + 5144 0.68 0.258966
Target:  5'- gGGAGcaGCCGGUGcgGCGUcGGCGUacgcguaGCCCu -3'
miRNA:   3'- -CCUC--CGGCCAC--UGCGuCCGCAc------CGGG- -5'
18683 5' -62.5 NC_004682.1 + 6247 0.68 0.246569
Target:  5'- uGAGGUCaGUGACGCcgaccuccGGGCucugGGCCUg -3'
miRNA:   3'- cCUCCGGcCACUGCG--------UCCGca--CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 35778 0.69 0.241153
Target:  5'- uGGAGGaguucaagauccuccCCGGUgGACGCcaccugugggcaucAGGCGUGaagaacGCCCa -3'
miRNA:   3'- -CCUCC---------------GGCCA-CUGCG--------------UCCGCAC------CGGG- -5'
18683 5' -62.5 NC_004682.1 + 13076 0.69 0.234668
Target:  5'- -cGGGUCGGUGACcuuGguGGCcaGGUCCg -3'
miRNA:   3'- ccUCCGGCCACUG---CguCCGcaCCGGG- -5'
18683 5' -62.5 NC_004682.1 + 12848 0.69 0.228901
Target:  5'- gGGAGGCCGGUuucggGGCGuCAGcGCGcu-CCCa -3'
miRNA:   3'- -CCUCCGGCCA-----CUGC-GUC-CGCaccGGG- -5'
18683 5' -62.5 NC_004682.1 + 17416 0.69 0.228901
Target:  5'- uGGAGuCCGGUc-UGCAGGCGaugGGCCa -3'
miRNA:   3'- -CCUCcGGCCAcuGCGUCCGCa--CCGGg -5'
18683 5' -62.5 NC_004682.1 + 12260 0.7 0.20184
Target:  5'- aGGAucGGCuCGGUGACGUuguccagcaGGGUGccGGUCCa -3'
miRNA:   3'- -CCU--CCG-GCCACUGCG---------UCCGCa-CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 8947 0.7 0.20184
Target:  5'- uGGGGGaCC-GUGACGCcuacGGCGUcgGGCCg -3'
miRNA:   3'- -CCUCC-GGcCACUGCGu---CCGCA--CCGGg -5'
18683 5' -62.5 NC_004682.1 + 8859 0.7 0.196772
Target:  5'- cGAGcGCCGGcccGACGCcguAGGCGUcacGGUCCc -3'
miRNA:   3'- cCUC-CGGCCa--CUGCG---UCCGCA---CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 20030 0.71 0.173075
Target:  5'- cGGGGCCGGcaaccUGACgGUAucGG-GUGGCCCa -3'
miRNA:   3'- cCUCCGGCC-----ACUG-CGU--CCgCACCGGG- -5'
18683 5' -62.5 NC_004682.1 + 4551 0.72 0.144184
Target:  5'- aGGAGaCCGGc--UGguGGUGUGGCCCu -3'
miRNA:   3'- -CCUCcGGCCacuGCguCCGCACCGGG- -5'
18683 5' -62.5 NC_004682.1 + 26018 0.73 0.125982
Target:  5'- uGAGGCCGGcgucgGAcucccgcCGUAGGCGgucgauugUGGCCCu -3'
miRNA:   3'- cCUCCGGCCa----CU-------GCGUCCGC--------ACCGGG- -5'
18683 5' -62.5 NC_004682.1 + 45634 0.74 0.101951
Target:  5'- uGGGGcugcugcucacGCCGGccccGGCGCAGGCG-GGUCCa -3'
miRNA:   3'- -CCUC-----------CGGCCa---CUGCGUCCGCaCCGGG- -5'
18683 5' -62.5 NC_004682.1 + 10499 1.13 0.0001
Target:  5'- aGGAGGCCGGUGACGCAGGCGUGGCCCa -3'
miRNA:   3'- -CCUCCGGCCACUGCGUCCGCACCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.