miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18684 3' -55.8 NC_004682.1 + 7332 0.66 0.671471
Target:  5'- gGCAAGGAcccguuCGCAGc-CGCGCUCuCGc -3'
miRNA:   3'- -UGUUCCUcu----GCGUCuuGCGCGAG-GCa -5'
18684 3' -55.8 NC_004682.1 + 12850 0.66 0.66044
Target:  5'- -gGGGGAGGC-CGGuuucggggcgucAGCGCGCUCCc- -3'
miRNA:   3'- ugUUCCUCUGcGUC------------UUGCGCGAGGca -5'
18684 3' -55.8 NC_004682.1 + 16655 0.66 0.66044
Target:  5'- aGCAGGcGcuGCGCGGcAUGCGCUCgGg -3'
miRNA:   3'- -UGUUC-CucUGCGUCuUGCGCGAGgCa -5'
18684 3' -55.8 NC_004682.1 + 19025 0.67 0.605097
Target:  5'- uACAAGGccagcAGACGauccagaacaAGAAgGCGCUCCa- -3'
miRNA:   3'- -UGUUCC-----UCUGCg---------UCUUgCGCGAGGca -5'
18684 3' -55.8 NC_004682.1 + 7373 0.68 0.550327
Target:  5'- -uGAGGcGGCGCAGGAUGCcCUCgCGg -3'
miRNA:   3'- ugUUCCuCUGCGUCUUGCGcGAG-GCa -5'
18684 3' -55.8 NC_004682.1 + 46364 0.68 0.497173
Target:  5'- uGCGAGGGaacgccuCGCGGAgagccagagcaGCGCGCUCCu- -3'
miRNA:   3'- -UGUUCCUcu-----GCGUCU-----------UGCGCGAGGca -5'
18684 3' -55.8 NC_004682.1 + 41756 0.68 0.497172
Target:  5'- gGCGaccuGGGGGACGCugAGGACGaGUUCCGc -3'
miRNA:   3'- -UGU----UCCUCUGCG--UCUUGCgCGAGGCa -5'
18684 3' -55.8 NC_004682.1 + 28671 0.7 0.417433
Target:  5'- uACGGGGGGAgGCcGGAU-CGCUCCGg -3'
miRNA:   3'- -UGUUCCUCUgCGuCUUGcGCGAGGCa -5'
18684 3' -55.8 NC_004682.1 + 28235 0.71 0.380592
Target:  5'- cGCAGGGGgcucggguGAUGUAGAGgGuCGCUCCGa -3'
miRNA:   3'- -UGUUCCU--------CUGCGUCUUgC-GCGAGGCa -5'
18684 3' -55.8 NC_004682.1 + 47397 0.72 0.313699
Target:  5'- uACGAGGAGACGCGGcAGCG-GCUggCCa- -3'
miRNA:   3'- -UGUUCCUCUGCGUC-UUGCgCGA--GGca -5'
18684 3' -55.8 NC_004682.1 + 2842 0.73 0.283743
Target:  5'- cGCGacGGGAucugggugccGACGCGGAACGCGUUCgGg -3'
miRNA:   3'- -UGU--UCCU----------CUGCGUCUUGCGCGAGgCa -5'
18684 3' -55.8 NC_004682.1 + 38212 0.73 0.283743
Target:  5'- cCAGGGGGACGagugaacgaGGAcaACGUGCUCCGc -3'
miRNA:   3'- uGUUCCUCUGCg--------UCU--UGCGCGAGGCa -5'
18684 3' -55.8 NC_004682.1 + 11031 0.75 0.207452
Target:  5'- uCGAGGcGACGaCGGAGCGCGUUCUGc -3'
miRNA:   3'- uGUUCCuCUGC-GUCUUGCGCGAGGCa -5'
18684 3' -55.8 NC_004682.1 + 10945 1.06 0.001195
Target:  5'- aACAAGGAGACGCAGAACGCGCUCCGUc -3'
miRNA:   3'- -UGUUCCUCUGCGUCUUGCGCGAGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.