miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18685 5' -58.6 NC_004682.1 + 33809 0.66 0.506754
Target:  5'- uGGGCCucgucgucggcAGGGGCCGAagcgaagGGGUCGAu--- -3'
miRNA:   3'- uUCCGG-----------UCCUCGGCU-------UCCAGCUcugc -5'
18685 5' -58.6 NC_004682.1 + 13823 0.66 0.477178
Target:  5'- cGAGGCgaAGGAGCgaggccgGAAGGcCGAGGCc -3'
miRNA:   3'- -UUCCGg-UCCUCGg------CUUCCaGCUCUGc -5'
18685 5' -58.6 NC_004682.1 + 48284 0.66 0.467177
Target:  5'- cGAGGCC-GGcGUCcu-GGUCGAGACa -3'
miRNA:   3'- -UUCCGGuCCuCGGcuuCCAGCUCUGc -5'
18685 5' -58.6 NC_004682.1 + 8962 0.67 0.457286
Target:  5'- --cGCCAGGAGCuUGAGGGcuUCGGcucGGCGg -3'
miRNA:   3'- uucCGGUCCUCG-GCUUCC--AGCU---CUGC- -5'
18685 5' -58.6 NC_004682.1 + 45770 0.67 0.434973
Target:  5'- cGAGGa-GGGAGCCGAAcaggcccacgugcuGGcCGAGACu -3'
miRNA:   3'- -UUCCggUCCUCGGCUU--------------CCaGCUCUGc -5'
18685 5' -58.6 NC_004682.1 + 50717 0.67 0.409603
Target:  5'- uGGGCaCAGGGuGCCGAgacgGGGUgcAGACGg -3'
miRNA:   3'- uUCCG-GUCCU-CGGCU----UCCAgcUCUGC- -5'
18685 5' -58.6 NC_004682.1 + 9531 0.68 0.404091
Target:  5'- aAGGGCgAGGAGCUGGGcGUCGAccccgagaccggccaGACGc -3'
miRNA:   3'- -UUCCGgUCCUCGGCUUcCAGCU---------------CUGC- -5'
18685 5' -58.6 NC_004682.1 + 8508 0.68 0.38252
Target:  5'- gAAGGCaauCGGGuuGCCGggGGUCGcguuGACc -3'
miRNA:   3'- -UUCCG---GUCCu-CGGCuuCCAGCu---CUGc -5'
18685 5' -58.6 NC_004682.1 + 36834 0.68 0.373761
Target:  5'- cAAGGCCcucgcccuGGAGCCGAAGGcCaaGGACc -3'
miRNA:   3'- -UUCCGGu-------CCUCGGCUUCCaGc-UCUGc -5'
18685 5' -58.6 NC_004682.1 + 27090 0.68 0.36514
Target:  5'- --aGCCAGGGGCCGA-GGUCuGGcCGc -3'
miRNA:   3'- uucCGGUCCUCGGCUuCCAGcUCuGC- -5'
18685 5' -58.6 NC_004682.1 + 27768 0.68 0.356656
Target:  5'- -cGGCCAGGAGCCacagcGG-CGGGAUc -3'
miRNA:   3'- uuCCGGUCCUCGGcuu--CCaGCUCUGc -5'
18685 5' -58.6 NC_004682.1 + 43246 0.69 0.332045
Target:  5'- -uGGCCgAGGucGCCaaGAAGGcCGGGACGa -3'
miRNA:   3'- uuCCGG-UCCu-CGG--CUUCCaGCUCUGC- -5'
18685 5' -58.6 NC_004682.1 + 1466 0.7 0.265833
Target:  5'- aGAGGaCCAGcGAGUCGcu-GUCGAGGCGg -3'
miRNA:   3'- -UUCC-GGUC-CUCGGCuucCAGCUCUGC- -5'
18685 5' -58.6 NC_004682.1 + 831 0.73 0.17399
Target:  5'- cGGGCCAGGAGCCcgcugaccacccaGGAGGUgacagugggcgaaCGAGGCc -3'
miRNA:   3'- uUCCGGUCCUCGG-------------CUUCCA-------------GCUCUGc -5'
18685 5' -58.6 NC_004682.1 + 11131 1.06 0.000687
Target:  5'- cAAGGCCAGGAGCCGAAGGUCGAGACGu -3'
miRNA:   3'- -UUCCGGUCCUCGGCUUCCAGCUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.