miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18686 3' -57.7 NC_004682.1 + 17800 0.66 0.541477
Target:  5'- -cGGCC-CUCGCcACCGCGAUGGGu- -3'
miRNA:   3'- cuUCGGcGGGCGaUGGCGUUGCUCuu -5'
18686 3' -57.7 NC_004682.1 + 16737 0.66 0.541477
Target:  5'- --uGCCGCCCGagcgcaUGCCGCGcaGCGccugcuGGAAc -3'
miRNA:   3'- cuuCGGCGGGCg-----AUGGCGU--UGC------UCUU- -5'
18686 3' -57.7 NC_004682.1 + 45654 0.66 0.530754
Target:  5'- --cGCCGCCaUGCUcGCCGCGcUGGGGc -3'
miRNA:   3'- cuuCGGCGG-GCGA-UGGCGUuGCUCUu -5'
18686 3' -57.7 NC_004682.1 + 33888 0.66 0.530754
Target:  5'- --cGCUucgGCCC-CUGCCGaCGACGAGGc -3'
miRNA:   3'- cuuCGG---CGGGcGAUGGC-GUUGCUCUu -5'
18686 3' -57.7 NC_004682.1 + 33480 0.66 0.529686
Target:  5'- gGAGGCC-CCCaacggggagaagcGCUACUGCGcccacgGCGAGAu -3'
miRNA:   3'- -CUUCGGcGGG-------------CGAUGGCGU------UGCUCUu -5'
18686 3' -57.7 NC_004682.1 + 16210 0.66 0.520109
Target:  5'- aAGGCCGCaCuCGCUcaguucGCCGCGAUGAu-- -3'
miRNA:   3'- cUUCGGCG-G-GCGA------UGGCGUUGCUcuu -5'
18686 3' -57.7 NC_004682.1 + 46153 0.66 0.520109
Target:  5'- cGAAGCCGacgaCUGCggagaccagcacUGCCGCugcgacGACGAGGAa -3'
miRNA:   3'- -CUUCGGCg---GGCG------------AUGGCG------UUGCUCUU- -5'
18686 3' -57.7 NC_004682.1 + 33557 0.66 0.520109
Target:  5'- cAGGCCGCUgGCgGCgGCAACGGc-- -3'
miRNA:   3'- cUUCGGCGGgCGaUGgCGUUGCUcuu -5'
18686 3' -57.7 NC_004682.1 + 39821 0.66 0.515875
Target:  5'- --cGCCGCCCgaugccucggcugcGCUcuugccaGCCGCgAACGGGAc -3'
miRNA:   3'- cuuCGGCGGG--------------CGA-------UGGCG-UUGCUCUu -5'
18686 3' -57.7 NC_004682.1 + 18637 0.67 0.478438
Target:  5'- aGAcGCUGCCCGCcaugcucuuCCGCAgauccuGCGAGGu -3'
miRNA:   3'- -CUuCGGCGGGCGau-------GGCGU------UGCUCUu -5'
18686 3' -57.7 NC_004682.1 + 36309 0.67 0.478438
Target:  5'- ---cCUGCCCGCUcaguACCGCGAcaacgcgguCGAGAAg -3'
miRNA:   3'- cuucGGCGGGCGA----UGGCGUU---------GCUCUU- -5'
18686 3' -57.7 NC_004682.1 + 44742 0.67 0.428787
Target:  5'- ---aCCGCaaGCU-CCGCGACGAGGGu -3'
miRNA:   3'- cuucGGCGggCGAuGGCGUUGCUCUU- -5'
18686 3' -57.7 NC_004682.1 + 21915 0.68 0.409793
Target:  5'- gGAAGUCGCCCaggcccgucucGCUGgucuCCaGCAGCGGGAu -3'
miRNA:   3'- -CUUCGGCGGG-----------CGAU----GG-CGUUGCUCUu -5'
18686 3' -57.7 NC_004682.1 + 2862 0.68 0.409793
Target:  5'- gGGAGuuGCCCaggaagauCCGCGACGGGAu -3'
miRNA:   3'- -CUUCggCGGGcgau----GGCGUUGCUCUu -5'
18686 3' -57.7 NC_004682.1 + 43987 0.68 0.391332
Target:  5'- -cAGCCGCCUgGCUcCCGCAG-GGGAGc -3'
miRNA:   3'- cuUCGGCGGG-CGAuGGCGUUgCUCUU- -5'
18686 3' -57.7 NC_004682.1 + 42394 0.68 0.373422
Target:  5'- cGGAGCUGgCU-CUACCGCAcCGAGGAa -3'
miRNA:   3'- -CUUCGGCgGGcGAUGGCGUuGCUCUU- -5'
18686 3' -57.7 NC_004682.1 + 7433 0.69 0.356076
Target:  5'- cGggGCCGCagaGUU-CCGCgAGCGAGAGc -3'
miRNA:   3'- -CuuCGGCGgg-CGAuGGCG-UUGCUCUU- -5'
18686 3' -57.7 NC_004682.1 + 21818 0.69 0.339304
Target:  5'- --uGCCGauCCCGCUGCUGgagacCAGCGAGAc -3'
miRNA:   3'- cuuCGGC--GGGCGAUGGC-----GUUGCUCUu -5'
18686 3' -57.7 NC_004682.1 + 6430 0.69 0.331136
Target:  5'- cGAGCacCGCCCGC-GCCGUgucGGCGGGGAg -3'
miRNA:   3'- cUUCG--GCGGGCGaUGGCG---UUGCUCUU- -5'
18686 3' -57.7 NC_004682.1 + 28696 0.7 0.307506
Target:  5'- cGAuGCCGCCCacucGCgGCgGCGGCGGGAc -3'
miRNA:   3'- -CUuCGGCGGG----CGaUGgCGUUGCUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.