Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18686 | 3' | -57.7 | NC_004682.1 | + | 2862 | 0.68 | 0.409793 |
Target: 5'- gGGAGuuGCCCaggaagauCCGCGACGGGAu -3' miRNA: 3'- -CUUCggCGGGcgau----GGCGUUGCUCUu -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 4621 | 0.71 | 0.24442 |
Target: 5'- gGAGGCCacGCUCGCUGCCGagauCGAGGc -3' miRNA: 3'- -CUUCGG--CGGGCGAUGGCguu-GCUCUu -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 6430 | 0.69 | 0.331136 |
Target: 5'- cGAGCacCGCCCGC-GCCGUgucGGCGGGGAg -3' miRNA: 3'- cUUCG--GCGGGCGaUGGCG---UUGCUCUU- -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 7433 | 0.69 | 0.356076 |
Target: 5'- cGggGCCGCagaGUU-CCGCgAGCGAGAGc -3' miRNA: 3'- -CuuCGGCGgg-CGAuGGCG-UUGCUCUU- -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 11190 | 1.06 | 0.000702 |
Target: 5'- aGAAGCCGCCCGCUACCGCAACGAGAAg -3' miRNA: 3'- -CUUCGGCGGGCGAUGGCGUUGCUCUU- -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 12885 | 0.72 | 0.238116 |
Target: 5'- uGAGCCGCUCGCUgGCgGCGuCGGGGGg -3' miRNA: 3'- cUUCGGCGGGCGA-UGgCGUuGCUCUU- -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 16210 | 0.66 | 0.520109 |
Target: 5'- aAGGCCGCaCuCGCUcaguucGCCGCGAUGAu-- -3' miRNA: 3'- cUUCGGCG-G-GCGA------UGGCGUUGCUcuu -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 16737 | 0.66 | 0.541477 |
Target: 5'- --uGCCGCCCGagcgcaUGCCGCGcaGCGccugcuGGAAc -3' miRNA: 3'- cuuCGGCGGGCg-----AUGGCGU--UGC------UCUU- -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 17800 | 0.66 | 0.541477 |
Target: 5'- -cGGCC-CUCGCcACCGCGAUGGGu- -3' miRNA: 3'- cuUCGGcGGGCGaUGGCGUUGCUCuu -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 18072 | 0.76 | 0.110502 |
Target: 5'- --uGCCGCCUgaGCgaagGCCGCAACGAGGc -3' miRNA: 3'- cuuCGGCGGG--CGa---UGGCGUUGCUCUu -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 18637 | 0.67 | 0.478438 |
Target: 5'- aGAcGCUGCCCGCcaugcucuuCCGCAgauccuGCGAGGu -3' miRNA: 3'- -CUuCGGCGGGCGau-------GGCGU------UGCUCUu -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 19966 | 0.7 | 0.285187 |
Target: 5'- -cGGCCaucGCCCGCaacgcgacUGCCGCGACGGuGAAg -3' miRNA: 3'- cuUCGG---CGGGCG--------AUGGCGUUGCU-CUU- -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 21818 | 0.69 | 0.339304 |
Target: 5'- --uGCCGauCCCGCUGCUGgagacCAGCGAGAc -3' miRNA: 3'- cuuCGGC--GGGCGAUGGC-----GUUGCUCUu -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 21915 | 0.68 | 0.409793 |
Target: 5'- gGAAGUCGCCCaggcccgucucGCUGgucuCCaGCAGCGGGAu -3' miRNA: 3'- -CUUCGGCGGG-----------CGAU----GG-CGUUGCUCUu -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 28696 | 0.7 | 0.307506 |
Target: 5'- cGAuGCCGCCCacucGCgGCgGCGGCGGGAc -3' miRNA: 3'- -CUuCGGCGGG----CGaUGgCGUUGCUCUu -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 33480 | 0.66 | 0.529686 |
Target: 5'- gGAGGCC-CCCaacggggagaagcGCUACUGCGcccacgGCGAGAu -3' miRNA: 3'- -CUUCGGcGGG-------------CGAUGGCGU------UGCUCUu -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 33557 | 0.66 | 0.520109 |
Target: 5'- cAGGCCGCUgGCgGCgGCAACGGc-- -3' miRNA: 3'- cUUCGGCGGgCGaUGgCGUUGCUcuu -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 33888 | 0.66 | 0.530754 |
Target: 5'- --cGCUucgGCCC-CUGCCGaCGACGAGGc -3' miRNA: 3'- cuuCGG---CGGGcGAUGGC-GUUGCUCUu -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 36006 | 0.78 | 0.085442 |
Target: 5'- cGAGGCCGCaaaGCaguucUACCGCAACGAGAu -3' miRNA: 3'- -CUUCGGCGgg-CG-----AUGGCGUUGCUCUu -5' |
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18686 | 3' | -57.7 | NC_004682.1 | + | 36309 | 0.67 | 0.478438 |
Target: 5'- ---cCUGCCCGCUcaguACCGCGAcaacgcgguCGAGAAg -3' miRNA: 3'- cuucGGCGGGCGA----UGGCGUU---------GCUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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