miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18687 5' -58.3 NC_004682.1 + 25930 0.66 0.562075
Target:  5'- ---aCGGCGcGGUUGCgccuCCGCcGGGUCCu -3'
miRNA:   3'- acagGUCGC-CUAGCG----GGCGuUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 40084 0.66 0.551471
Target:  5'- cGcCCgagaGGCGcuguGUgGCCCGCAgaGGGUCCu -3'
miRNA:   3'- aCaGG----UCGCc---UAgCGGGCGU--UCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 19874 0.66 0.551471
Target:  5'- gUGgCCuGCGGA-CGU--GCGAGGUCCa -3'
miRNA:   3'- -ACaGGuCGCCUaGCGggCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 2380 0.66 0.539878
Target:  5'- gGUCCcgaagggccacagGGUGaGA-CGggaCCGCAGGGUCCg -3'
miRNA:   3'- aCAGG-------------UCGC-CUaGCg--GGCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 19548 0.66 0.520056
Target:  5'- --cCCGGUGGAUCuuGCCCuuGCgGGGGUCg -3'
miRNA:   3'- acaGGUCGCCUAG--CGGG--CG-UUCCAGg -5'
18687 5' -58.3 NC_004682.1 + 27538 0.66 0.509738
Target:  5'- uUGUCCGuCGcGAg-GUCCGCGAGGgCCg -3'
miRNA:   3'- -ACAGGUcGC-CUagCGGGCGUUCCaGG- -5'
18687 5' -58.3 NC_004682.1 + 37804 0.67 0.499507
Target:  5'- cGUCgAGCGcAUCuacgaggaGCCCGuCGAGGcUCCa -3'
miRNA:   3'- aCAGgUCGCcUAG--------CGGGC-GUUCC-AGG- -5'
18687 5' -58.3 NC_004682.1 + 18210 0.67 0.499507
Target:  5'- aGUCCGGUaaGGcGUUGaUCGCAGGGUUCg -3'
miRNA:   3'- aCAGGUCG--CC-UAGCgGGCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 19716 0.67 0.499507
Target:  5'- cGUCCucCGGGUCGaCCGUGAuGGUCa -3'
miRNA:   3'- aCAGGucGCCUAGCgGGCGUU-CCAGg -5'
18687 5' -58.3 NC_004682.1 + 23973 0.67 0.489367
Target:  5'- cGUCCuGgGGGUguggccggUGCCCGUcAGGcCCa -3'
miRNA:   3'- aCAGGuCgCCUA--------GCGGGCGuUCCaGG- -5'
18687 5' -58.3 NC_004682.1 + 12867 0.67 0.489367
Target:  5'- cGUCgGGgGGAUCGCuuGgggGAGG-CCg -3'
miRNA:   3'- aCAGgUCgCCUAGCGggCg--UUCCaGG- -5'
18687 5' -58.3 NC_004682.1 + 2078 0.67 0.479325
Target:  5'- cGaCCGGCccgcaggGUCCGCAGGGUCCa -3'
miRNA:   3'- aCaGGUCGccuag--CGGGCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 38248 0.67 0.479325
Target:  5'- -uUCCAGCaGA--GCCCGUuuGGUCUg -3'
miRNA:   3'- acAGGUCGcCUagCGGGCGuuCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 35582 0.67 0.476333
Target:  5'- gGUCCAGCaGGAgcuguacguccacaUCGUCUGCGAcccGGaCCa -3'
miRNA:   3'- aCAGGUCG-CCU--------------AGCGGGCGUU---CCaGG- -5'
18687 5' -58.3 NC_004682.1 + 22807 0.67 0.469385
Target:  5'- gGUCCAGCGGcugcguAUCGUCUGUAGcugCCa -3'
miRNA:   3'- aCAGGUCGCC------UAGCGGGCGUUccaGG- -5'
18687 5' -58.3 NC_004682.1 + 30298 0.68 0.440221
Target:  5'- aGUUCAGCGccGAguagGCCCGUgaGGGGUCUa -3'
miRNA:   3'- aCAGGUCGC--CUag--CGGGCG--UUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 50125 0.68 0.438313
Target:  5'- -cUCUAGCGGAUCGUUCGUucucugucaaGUCCg -3'
miRNA:   3'- acAGGUCGCCUAGCGGGCGuuc-------CAGG- -5'
18687 5' -58.3 NC_004682.1 + 6310 0.68 0.43073
Target:  5'- gGUCCAcggcacCGGAcaggcCGaCCCGCuGGGUCCg -3'
miRNA:   3'- aCAGGUc-----GCCUa----GC-GGGCGuUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 20266 0.68 0.43073
Target:  5'- cGUCguGCGG-UCGaCCCGCAcguuGGgaaCCg -3'
miRNA:   3'- aCAGguCGCCuAGC-GGGCGUu---CCa--GG- -5'
18687 5' -58.3 NC_004682.1 + 3034 0.68 0.427906
Target:  5'- cUGcCCAGCGccgcCGCCCGCGcccagaagucgaucAGGUUCa -3'
miRNA:   3'- -ACaGGUCGCcua-GCGGGCGU--------------UCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.