miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18687 5' -58.3 NC_004682.1 + 166 0.71 0.285226
Target:  5'- cUGUCCAGU----CGCCCGCGAGGgcggcucugagccucUCCa -3'
miRNA:   3'- -ACAGGUCGccuaGCGGGCGUUCC---------------AGG- -5'
18687 5' -58.3 NC_004682.1 + 1963 0.75 0.139315
Target:  5'- cGUCgAuGUGGAgucccUCGCCCGCAGGG-CCu -3'
miRNA:   3'- aCAGgU-CGCCU-----AGCGGGCGUUCCaGG- -5'
18687 5' -58.3 NC_004682.1 + 2047 0.84 0.0339
Target:  5'- gGUCCAcGCGGAcugacUgGUCCGCAGGGUCCg -3'
miRNA:   3'- aCAGGU-CGCCU-----AgCGGGCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 2078 0.67 0.479325
Target:  5'- cGaCCGGCccgcaggGUCCGCAGGGUCCa -3'
miRNA:   3'- aCaGGUCGccuag--CGGGCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 2236 0.73 0.192252
Target:  5'- gGcCCAGCaGGUCccaccgGCCCGCAAGGgCCg -3'
miRNA:   3'- aCaGGUCGcCUAG------CGGGCGUUCCaGG- -5'
18687 5' -58.3 NC_004682.1 + 2380 0.66 0.539878
Target:  5'- gGUCCcgaagggccacagGGUGaGA-CGggaCCGCAGGGUCCg -3'
miRNA:   3'- aCAGG-------------UCGC-CUaGCg--GGCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 3034 0.68 0.427906
Target:  5'- cUGcCCAGCGccgcCGCCCGCGcccagaagucgaucAGGUUCa -3'
miRNA:   3'- -ACaGGUCGCcua-GCGGGCGU--------------UCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 4846 0.7 0.338027
Target:  5'- gGUCCuucugagccugcgugGGCGGAUCGUUCGUcAGGUagaCCg -3'
miRNA:   3'- aCAGG---------------UCGCCUAGCGGGCGuUCCA---GG- -5'
18687 5' -58.3 NC_004682.1 + 5605 0.7 0.319156
Target:  5'- ----gAGCGGAUCGCCCGCuGGaaCCg -3'
miRNA:   3'- acaggUCGCCUAGCGGGCGuUCcaGG- -5'
18687 5' -58.3 NC_004682.1 + 5883 0.7 0.319156
Target:  5'- cGUCgAGCGcGUUGCUCGCGacGGcGUCCa -3'
miRNA:   3'- aCAGgUCGCcUAGCGGGCGU--UC-CAGG- -5'
18687 5' -58.3 NC_004682.1 + 6310 0.68 0.43073
Target:  5'- gGUCCAcggcacCGGAcaggcCGaCCCGCuGGGUCCg -3'
miRNA:   3'- aCAGGUc-----GCCUa----GC-GGGCGuUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 6392 0.73 0.192252
Target:  5'- --cCCAGCGGGUCgGCCUGUccGGUgCCg -3'
miRNA:   3'- acaGGUCGCCUAG-CGGGCGuuCCA-GG- -5'
18687 5' -58.3 NC_004682.1 + 9296 0.68 0.402996
Target:  5'- cGUCCucgauggcGCGGAUgGCUCGCAucaccugucGGGUgCg -3'
miRNA:   3'- aCAGGu-------CGCCUAgCGGGCGU---------UCCAgG- -5'
18687 5' -58.3 NC_004682.1 + 11734 1.1 0.000372
Target:  5'- uUGUCCAGCGGAUCGCCCGCAAGGUCCc -3'
miRNA:   3'- -ACAGGUCGCCUAGCGGGCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 12867 0.67 0.489367
Target:  5'- cGUCgGGgGGAUCGCuuGgggGAGG-CCg -3'
miRNA:   3'- aCAGgUCgCCUAGCGggCg--UUCCaGG- -5'
18687 5' -58.3 NC_004682.1 + 16318 0.69 0.385146
Target:  5'- cGaCCAGCGG-UCGCUCGCAucG-CCg -3'
miRNA:   3'- aCaGGUCGCCuAGCGGGCGUucCaGG- -5'
18687 5' -58.3 NC_004682.1 + 18210 0.67 0.499507
Target:  5'- aGUCCGGUaaGGcGUUGaUCGCAGGGUUCg -3'
miRNA:   3'- aCAGGUCG--CC-UAGCgGGCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 19548 0.66 0.520056
Target:  5'- --cCCGGUGGAUCuuGCCCuuGCgGGGGUCg -3'
miRNA:   3'- acaGGUCGCCUAG--CGGG--CG-UUCCAGg -5'
18687 5' -58.3 NC_004682.1 + 19716 0.67 0.499507
Target:  5'- cGUCCucCGGGUCGaCCGUGAuGGUCa -3'
miRNA:   3'- aCAGGucGCCUAGCgGGCGUU-CCAGg -5'
18687 5' -58.3 NC_004682.1 + 19874 0.66 0.551471
Target:  5'- gUGgCCuGCGGA-CGU--GCGAGGUCCa -3'
miRNA:   3'- -ACaGGuCGCCUaGCGggCGUUCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.