miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18687 5' -58.3 NC_004682.1 + 11734 1.1 0.000372
Target:  5'- uUGUCCAGCGGAUCGCCCGCAAGGUCCc -3'
miRNA:   3'- -ACAGGUCGCCUAGCGGGCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 25930 0.66 0.562075
Target:  5'- ---aCGGCGcGGUUGCgccuCCGCcGGGUCCu -3'
miRNA:   3'- acagGUCGC-CUAGCG----GGCGuUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 40084 0.66 0.551471
Target:  5'- cGcCCgagaGGCGcuguGUgGCCCGCAgaGGGUCCu -3'
miRNA:   3'- aCaGG----UCGCc---UAgCGGGCGU--UCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 19874 0.66 0.551471
Target:  5'- gUGgCCuGCGGA-CGU--GCGAGGUCCa -3'
miRNA:   3'- -ACaGGuCGCCUaGCGggCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 2380 0.66 0.539878
Target:  5'- gGUCCcgaagggccacagGGUGaGA-CGggaCCGCAGGGUCCg -3'
miRNA:   3'- aCAGG-------------UCGC-CUaGCg--GGCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 18210 0.67 0.499507
Target:  5'- aGUCCGGUaaGGcGUUGaUCGCAGGGUUCg -3'
miRNA:   3'- aCAGGUCG--CC-UAGCgGGCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 38248 0.67 0.479325
Target:  5'- -uUCCAGCaGA--GCCCGUuuGGUCUg -3'
miRNA:   3'- acAGGUCGcCUagCGGGCGuuCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 2078 0.67 0.479325
Target:  5'- cGaCCGGCccgcaggGUCCGCAGGGUCCa -3'
miRNA:   3'- aCaGGUCGccuag--CGGGCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 30298 0.68 0.440221
Target:  5'- aGUUCAGCGccGAguagGCCCGUgaGGGGUCUa -3'
miRNA:   3'- aCAGGUCGC--CUag--CGGGCG--UUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 50125 0.68 0.438313
Target:  5'- -cUCUAGCGGAUCGUUCGUucucugucaaGUCCg -3'
miRNA:   3'- acAGGUCGCCUAGCGGGCGuuc-------CAGG- -5'
18687 5' -58.3 NC_004682.1 + 6310 0.68 0.43073
Target:  5'- gGUCCAcggcacCGGAcaggcCGaCCCGCuGGGUCCg -3'
miRNA:   3'- aCAGGUc-----GCCUa----GC-GGGCGuUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 2047 0.84 0.0339
Target:  5'- gGUCCAcGCGGAcugacUgGUCCGCAGGGUCCg -3'
miRNA:   3'- aCAGGU-CGCCU-----AgCGGGCGUUCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 2236 0.73 0.192252
Target:  5'- gGcCCAGCaGGUCccaccgGCCCGCAAGGgCCg -3'
miRNA:   3'- aCaGGUCGcCUAG------CGGGCGUUCCaGG- -5'
18687 5' -58.3 NC_004682.1 + 5605 0.7 0.319156
Target:  5'- ----gAGCGGAUCGCCCGCuGGaaCCg -3'
miRNA:   3'- acaggUCGCCUAGCGGGCGuUCcaGG- -5'
18687 5' -58.3 NC_004682.1 + 5883 0.7 0.319156
Target:  5'- cGUCgAGCGcGUUGCUCGCGacGGcGUCCa -3'
miRNA:   3'- aCAGgUCGCcUAGCGGGCGU--UC-CAGG- -5'
18687 5' -58.3 NC_004682.1 + 26211 0.69 0.359371
Target:  5'- cGUCCgaccgcAGCGGuaCGUCCGguAGGUCa -3'
miRNA:   3'- aCAGG------UCGCCuaGCGGGCguUCCAGg -5'
18687 5' -58.3 NC_004682.1 + 23706 0.69 0.367828
Target:  5'- cGaCCuuCGGGUCGCUgGCGaccgAGGUCCa -3'
miRNA:   3'- aCaGGucGCCUAGCGGgCGU----UCCAGG- -5'
18687 5' -58.3 NC_004682.1 + 42152 0.68 0.402996
Target:  5'- cGUC--GUGGAUCGCucggccCCGCGAGG-CCg -3'
miRNA:   3'- aCAGguCGCCUAGCG------GGCGUUCCaGG- -5'
18687 5' -58.3 NC_004682.1 + 21066 0.81 0.060208
Target:  5'- gGUCgAGCGGGUUGUCCGgGAGcGUCCa -3'
miRNA:   3'- aCAGgUCGCCUAGCGGGCgUUC-CAGG- -5'
18687 5' -58.3 NC_004682.1 + 27538 0.66 0.509738
Target:  5'- uUGUCCGuCGcGAg-GUCCGCGAGGgCCg -3'
miRNA:   3'- -ACAGGUcGC-CUagCGGGCGUUCCaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.