miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18688 5' -55.4 NC_004682.1 + 40785 0.66 0.726036
Target:  5'- aGCCGaGUGGGacgagcacggCAAGcgCGCCGGGGu -3'
miRNA:   3'- gUGGUaCGCCUg---------GUUCuaGCGGCUCC- -5'
18688 5' -55.4 NC_004682.1 + 31001 0.66 0.715399
Target:  5'- gACCG-GuuGAUCAAGGagggcgacccgcUCGCCGAGGc -3'
miRNA:   3'- gUGGUaCgcCUGGUUCU------------AGCGGCUCC- -5'
18688 5' -55.4 NC_004682.1 + 31536 0.66 0.715399
Target:  5'- cCAgCGUGCGcucgauGACCugGAGGUCGUaCGAGGc -3'
miRNA:   3'- -GUgGUACGC------CUGG--UUCUAGCG-GCUCC- -5'
18688 5' -55.4 NC_004682.1 + 4571 0.66 0.70468
Target:  5'- gGCCcUGCGG-CCAcccAGGUCGUgcucaacucgCGAGGc -3'
miRNA:   3'- gUGGuACGCCuGGU---UCUAGCG----------GCUCC- -5'
18688 5' -55.4 NC_004682.1 + 2012 0.66 0.70468
Target:  5'- cCGCCAUcGgGGACCGagguggguAGGUCGUCGuAGu -3'
miRNA:   3'- -GUGGUA-CgCCUGGU--------UCUAGCGGC-UCc -5'
18688 5' -55.4 NC_004682.1 + 17854 0.66 0.690642
Target:  5'- gGCCgggauGUGCGGuGCCAGGuuggucaccagcguGUUGCCGAGc -3'
miRNA:   3'- gUGG-----UACGCC-UGGUUC--------------UAGCGGCUCc -5'
18688 5' -55.4 NC_004682.1 + 41097 0.66 0.683042
Target:  5'- -uUCGU-CGcGAUC-AGGUCGCCGAGGa -3'
miRNA:   3'- guGGUAcGC-CUGGuUCUAGCGGCUCC- -5'
18688 5' -55.4 NC_004682.1 + 7435 0.66 0.672145
Target:  5'- aCGCCGcGUGGAUCAccAUCGCCGccgucagccAGGa -3'
miRNA:   3'- -GUGGUaCGCCUGGUucUAGCGGC---------UCC- -5'
18688 5' -55.4 NC_004682.1 + 7954 0.66 0.672145
Target:  5'- aGCUccGagaGGGCauCGAGAUCGCcCGAGGg -3'
miRNA:   3'- gUGGuaCg--CCUG--GUUCUAGCG-GCUCC- -5'
18688 5' -55.4 NC_004682.1 + 38443 0.67 0.639271
Target:  5'- uCAUCcucGCGGACgGGGAcgaGCCGGGGc -3'
miRNA:   3'- -GUGGua-CGCCUGgUUCUag-CGGCUCC- -5'
18688 5' -55.4 NC_004682.1 + 46337 0.68 0.606337
Target:  5'- aGCgCGUGCGGccCCGAGccCGCCGGGu -3'
miRNA:   3'- gUG-GUACGCCu-GGUUCuaGCGGCUCc -5'
18688 5' -55.4 NC_004682.1 + 26681 0.68 0.584475
Target:  5'- cCGCCAUGUccuCCAGGAUCGCCu--- -3'
miRNA:   3'- -GUGGUACGccuGGUUCUAGCGGcucc -5'
18688 5' -55.4 NC_004682.1 + 6661 0.68 0.584475
Target:  5'- cUACCuUGCGGAC----AUCGCCGAGc -3'
miRNA:   3'- -GUGGuACGCCUGguucUAGCGGCUCc -5'
18688 5' -55.4 NC_004682.1 + 27236 0.68 0.584475
Target:  5'- uCGCCGaGCaGGGCCAcacGGUCGUCGGGu -3'
miRNA:   3'- -GUGGUaCG-CCUGGUu--CUAGCGGCUCc -5'
18688 5' -55.4 NC_004682.1 + 819 0.68 0.584475
Target:  5'- gGCCGcauauaGCGGGCCAGGAgccCGCUGAc- -3'
miRNA:   3'- gUGGUa-----CGCCUGGUUCUa--GCGGCUcc -5'
18688 5' -55.4 NC_004682.1 + 49524 0.68 0.572515
Target:  5'- gGCCAUaccugucGCGGACCAAGuagCGCuCGAc- -3'
miRNA:   3'- gUGGUA-------CGCCUGGUUCua-GCG-GCUcc -5'
18688 5' -55.4 NC_004682.1 + 11117 0.68 0.552
Target:  5'- cCGCCGcGaCGGACCAAGGccaggaGCCGaAGGu -3'
miRNA:   3'- -GUGGUaC-GCCUGGUUCUag----CGGC-UCC- -5'
18688 5' -55.4 NC_004682.1 + 40141 0.69 0.530652
Target:  5'- uGCC-UGCGGcagcaucgAgCAGGAUCGCCGccAGGa -3'
miRNA:   3'- gUGGuACGCC--------UgGUUCUAGCGGC--UCC- -5'
18688 5' -55.4 NC_004682.1 + 1936 0.69 0.530652
Target:  5'- gGCCuUGCGGcCCGAuGggGCCGGGGa -3'
miRNA:   3'- gUGGuACGCCuGGUUcUagCGGCUCC- -5'
18688 5' -55.4 NC_004682.1 + 41775 0.69 0.524306
Target:  5'- gGCCAggGCGGugCGugagggcgaccugggGGA-CGCUGAGGa -3'
miRNA:   3'- gUGGUa-CGCCugGU---------------UCUaGCGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.