Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18689 | 3' | -52.6 | NC_004682.1 | + | 42543 | 0.66 | 0.826369 |
|
Target: 5'- uGGC-UCGGCGGcGCC-UCUGCGgcCAAc -3' miRNA: 3'- -CCGuAGCUGUU-CGGcAGACGCaaGUU- -5' |
|||||||
| 18689 | 3' | -52.6 | NC_004682.1 | + | 37376 | 0.66 | 0.807142 |
|
Target: 5'- cGGgAUCGACcuGCUGcCUGaGUUCAAc -3' miRNA: 3'- -CCgUAGCUGuuCGGCaGACgCAAGUU- -5' |
|||||||
| 18689 | 3' | -52.6 | NC_004682.1 | + | 11615 | 0.67 | 0.776859 |
|
Target: 5'- cGCGUCGAgAAGCgGgUUGcCGUUCAGc -3' miRNA: 3'- cCGUAGCUgUUCGgCaGAC-GCAAGUU- -5' |
|||||||
| 18689 | 3' | -52.6 | NC_004682.1 | + | 8635 | 0.67 | 0.766428 |
|
Target: 5'- cGGCAagaagaUUGACGccGCCGUCUGCGcggUCc- -3' miRNA: 3'- -CCGU------AGCUGUu-CGGCAGACGCa--AGuu -5' |
|||||||
| 18689 | 3' | -52.6 | NC_004682.1 | + | 7485 | 0.67 | 0.75585 |
|
Target: 5'- uGGCGUggcuugcccacCGGauuGCCGUCUGCG-UCGAa -3' miRNA: 3'- -CCGUA-----------GCUguuCGGCAGACGCaAGUU- -5' |
|||||||
| 18689 | 3' | -52.6 | NC_004682.1 | + | 41527 | 0.67 | 0.734301 |
|
Target: 5'- uGGCgcgGUCGACGAG-CGcCUGCGUggUCGg -3' miRNA: 3'- -CCG---UAGCUGUUCgGCaGACGCA--AGUu -5' |
|||||||
| 18689 | 3' | -52.6 | NC_004682.1 | + | 38434 | 0.69 | 0.610599 |
|
Target: 5'- cGGaCGggGACGAGCCGgggCUGCaGUUCGc -3' miRNA: 3'- -CC-GUagCUGUUCGGCa--GACG-CAAGUu -5' |
|||||||
| 18689 | 3' | -52.6 | NC_004682.1 | + | 18933 | 0.71 | 0.499538 |
|
Target: 5'- gGGCAU--ACGAGCCGUCU-UGUUCAGa -3' miRNA: 3'- -CCGUAgcUGUUCGGCAGAcGCAAGUU- -5' |
|||||||
| 18689 | 3' | -52.6 | NC_004682.1 | + | 6144 | 0.74 | 0.379718 |
|
Target: 5'- aGGCGUacgaCGGCGGGCCG-CUGCGagUCGAc -3' miRNA: 3'- -CCGUA----GCUGUUCGGCaGACGCa-AGUU- -5' |
|||||||
| 18689 | 3' | -52.6 | NC_004682.1 | + | 12010 | 1.09 | 0.001468 |
|
Target: 5'- cGGCAUCGACAAGCCGUCUGCGUUCAAg -3' miRNA: 3'- -CCGUAGCUGUUCGGCAGACGCAAGUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home