miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18689 5' -55.4 NC_004682.1 + 48183 0.66 0.752167
Target:  5'- cGCCGAGuCGACCGAG--UGaUGcUCGCc -3'
miRNA:   3'- cCGGCUCuGCUGGUUCcaGC-AC-AGCG- -5'
18689 5' -55.4 NC_004682.1 + 44167 0.66 0.752167
Target:  5'- gGGUCgGAGACGACgAcGGGaUCGUGggucgagUGCa -3'
miRNA:   3'- -CCGG-CUCUGCUGgU-UCC-AGCACa------GCG- -5'
18689 5' -55.4 NC_004682.1 + 47692 0.66 0.752167
Target:  5'- uGGCUGaAGGCaaggucuCCGAGGcCG-GUCGCc -3'
miRNA:   3'- -CCGGC-UCUGcu-----GGUUCCaGCaCAGCG- -5'
18689 5' -55.4 NC_004682.1 + 46691 0.66 0.741894
Target:  5'- cGCCGaAGAUGugCAgcaccGGGUaccgCGUGcCGCu -3'
miRNA:   3'- cCGGC-UCUGCugGU-----UCCA----GCACaGCG- -5'
18689 5' -55.4 NC_004682.1 + 43895 0.66 0.735677
Target:  5'- aGGCCcagGAGAUGuucaaggaggaguacGCCAAaGagGUGUCGCa -3'
miRNA:   3'- -CCGG---CUCUGC---------------UGGUUcCagCACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 12127 0.66 0.731512
Target:  5'- cGGCCagcGAcACGACCuuGGUCGUcUCGg -3'
miRNA:   3'- -CCGG---CUcUGCUGGuuCCAGCAcAGCg -5'
18689 5' -55.4 NC_004682.1 + 32657 0.66 0.731512
Target:  5'- uGCCGGuGACGACCAucggugaguuGGUCaUGUUcgGCa -3'
miRNA:   3'- cCGGCU-CUGCUGGUu---------CCAGcACAG--CG- -5'
18689 5' -55.4 NC_004682.1 + 12274 0.66 0.721034
Target:  5'- cGGCgCGAuccguGAgGGCCGcauccuGGGUCGUcccaccuacGUCGCg -3'
miRNA:   3'- -CCG-GCU-----CUgCUGGU------UCCAGCA---------CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 27130 0.66 0.721034
Target:  5'- uGGCCGAGAC-AUCGAGGUCu------ -3'
miRNA:   3'- -CCGGCUCUGcUGGUUCCAGcacagcg -5'
18689 5' -55.4 NC_004682.1 + 887 0.66 0.710469
Target:  5'- uGGCCcgcuauauGCGGCCAGGGuggcguUCGgucgGUCGCu -3'
miRNA:   3'- -CCGGcuc-----UGCUGGUUCC------AGCa---CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 31462 0.66 0.710469
Target:  5'- gGGCCuGggguccaccaGGugGGCCAGGaucuUCGUGUCGg -3'
miRNA:   3'- -CCGG-C----------UCugCUGGUUCc---AGCACAGCg -5'
18689 5' -55.4 NC_004682.1 + 16435 0.66 0.710469
Target:  5'- -uUCGAGACGGCCA--GUCGaccGUCGUu -3'
miRNA:   3'- ccGGCUCUGCUGGUucCAGCa--CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 23056 0.67 0.689126
Target:  5'- cGGaCUGGGugGACCu-GGUCGccuaCGCg -3'
miRNA:   3'- -CC-GGCUCugCUGGuuCCAGCaca-GCG- -5'
18689 5' -55.4 NC_004682.1 + 36301 0.67 0.682677
Target:  5'- aGCUGAcucccGACGaacggacuggcgaguGCCAGGGcCGUcGUCGCg -3'
miRNA:   3'- cCGGCU-----CUGC---------------UGGUUCCaGCA-CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 2227 0.67 0.678369
Target:  5'- gGGCCuuGugGACCGguAGGUCccUGcUCGCc -3'
miRNA:   3'- -CCGGcuCugCUGGU--UCCAGc-AC-AGCG- -5'
18689 5' -55.4 NC_004682.1 + 11863 0.67 0.667569
Target:  5'- cGCCGAGACGGCaccGGUCcaGUGggggaUGCu -3'
miRNA:   3'- cCGGCUCUGCUGguuCCAG--CACa----GCG- -5'
18689 5' -55.4 NC_004682.1 + 34995 0.67 0.656736
Target:  5'- -uCCGGGAacUGACCGAGGggaugGUCGCc -3'
miRNA:   3'- ccGGCUCU--GCUGGUUCCagca-CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 20030 0.67 0.656736
Target:  5'- uGCgGGcGAUGGCCGcuGUgGUGUCGCc -3'
miRNA:   3'- cCGgCU-CUGCUGGUucCAgCACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 15836 0.67 0.645882
Target:  5'- gGGauGGGACGAgUCGAGGUaCGcgcugGUCGCa -3'
miRNA:   3'- -CCggCUCUGCU-GGUUCCA-GCa----CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 40351 0.67 0.645882
Target:  5'- cGaaGAGAUGACCAGGGUCa---CGCu -3'
miRNA:   3'- cCggCUCUGCUGGUUCCAGcacaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.