Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18689 | 5' | -55.4 | NC_004682.1 | + | 48183 | 0.66 | 0.752167 |
Target: 5'- cGCCGAGuCGACCGAG--UGaUGcUCGCc -3' miRNA: 3'- cCGGCUCuGCUGGUUCcaGC-AC-AGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 46691 | 0.66 | 0.741894 |
Target: 5'- cGCCGaAGAUGugCAgcaccGGGUaccgCGUGcCGCu -3' miRNA: 3'- cCGGC-UCUGCugGU-----UCCA----GCACaGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 32657 | 0.66 | 0.731512 |
Target: 5'- uGCCGGuGACGACCAucggugaguuGGUCaUGUUcgGCa -3' miRNA: 3'- cCGGCU-CUGCUGGUu---------CCAGcACAG--CG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 27130 | 0.66 | 0.721034 |
Target: 5'- uGGCCGAGAC-AUCGAGGUCu------ -3' miRNA: 3'- -CCGGCUCUGcUGGUUCCAGcacagcg -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 12274 | 0.66 | 0.721034 |
Target: 5'- cGGCgCGAuccguGAgGGCCGcauccuGGGUCGUcccaccuacGUCGCg -3' miRNA: 3'- -CCG-GCU-----CUgCUGGU------UCCAGCA---------CAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 31462 | 0.66 | 0.710469 |
Target: 5'- gGGCCuGggguccaccaGGugGGCCAGGaucuUCGUGUCGg -3' miRNA: 3'- -CCGG-C----------UCugCUGGUUCc---AGCACAGCg -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 44167 | 0.66 | 0.752167 |
Target: 5'- gGGUCgGAGACGACgAcGGGaUCGUGggucgagUGCa -3' miRNA: 3'- -CCGG-CUCUGCUGgU-UCC-AGCACa------GCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 47692 | 0.66 | 0.752167 |
Target: 5'- uGGCUGaAGGCaaggucuCCGAGGcCG-GUCGCc -3' miRNA: 3'- -CCGGC-UCUGcu-----GGUUCCaGCaCAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 43895 | 0.66 | 0.735677 |
Target: 5'- aGGCCcagGAGAUGuucaaggaggaguacGCCAAaGagGUGUCGCa -3' miRNA: 3'- -CCGG---CUCUGC---------------UGGUUcCagCACAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 12127 | 0.66 | 0.731512 |
Target: 5'- cGGCCagcGAcACGACCuuGGUCGUcUCGg -3' miRNA: 3'- -CCGG---CUcUGCUGGuuCCAGCAcAGCg -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 887 | 0.66 | 0.710469 |
Target: 5'- uGGCCcgcuauauGCGGCCAGGGuggcguUCGgucgGUCGCu -3' miRNA: 3'- -CCGGcuc-----UGCUGGUUCC------AGCa---CAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 16435 | 0.66 | 0.710469 |
Target: 5'- -uUCGAGACGGCCA--GUCGaccGUCGUu -3' miRNA: 3'- ccGGCUCUGCUGGUucCAGCa--CAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 11863 | 0.67 | 0.667569 |
Target: 5'- cGCCGAGACGGCaccGGUCcaGUGggggaUGCu -3' miRNA: 3'- cCGGCUCUGCUGguuCCAG--CACa----GCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 23056 | 0.67 | 0.689126 |
Target: 5'- cGGaCUGGGugGACCu-GGUCGccuaCGCg -3' miRNA: 3'- -CC-GGCUCugCUGGuuCCAGCaca-GCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 36301 | 0.67 | 0.682677 |
Target: 5'- aGCUGAcucccGACGaacggacuggcgaguGCCAGGGcCGUcGUCGCg -3' miRNA: 3'- cCGGCU-----CUGC---------------UGGUUCCaGCA-CAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 15836 | 0.67 | 0.645882 |
Target: 5'- gGGauGGGACGAgUCGAGGUaCGcgcugGUCGCa -3' miRNA: 3'- -CCggCUCUGCU-GGUUCCA-GCa----CAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 2227 | 0.67 | 0.678369 |
Target: 5'- gGGCCuuGugGACCGguAGGUCccUGcUCGCc -3' miRNA: 3'- -CCGGcuCugCUGGU--UCCAGc-AC-AGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 34995 | 0.67 | 0.656736 |
Target: 5'- -uCCGGGAacUGACCGAGGggaugGUCGCc -3' miRNA: 3'- ccGGCUCU--GCUGGUUCCagca-CAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 20030 | 0.67 | 0.656736 |
Target: 5'- uGCgGGcGAUGGCCGcuGUgGUGUCGCc -3' miRNA: 3'- cCGgCU-CUGCUGGUucCAgCACAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 40351 | 0.67 | 0.645882 |
Target: 5'- cGaaGAGAUGACCAGGGUCa---CGCu -3' miRNA: 3'- cCggCUCUGCUGGUUCCAGcacaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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