miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18689 5' -55.4 NC_004682.1 + 16696 0.68 0.635015
Target:  5'- gGGCCuGGAgGGCUcGGGUCGaUGUCccgGCu -3'
miRNA:   3'- -CCGGcUCUgCUGGuUCCAGC-ACAG---CG- -5'
18689 5' -55.4 NC_004682.1 + 49515 0.68 0.635015
Target:  5'- aGCCGuGACGGCCAua--CcUGUCGCg -3'
miRNA:   3'- cCGGCuCUGCUGGUuccaGcACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 21849 0.68 0.624146
Target:  5'- gGGCCuGGGCGACUuccacuacuacgAGGGUUGgGUCGa -3'
miRNA:   3'- -CCGGcUCUGCUGG------------UUCCAGCaCAGCg -5'
18689 5' -55.4 NC_004682.1 + 23714 0.68 0.613284
Target:  5'- gGGUCGcuGGCGACCGAGGUCcaucaggUGCu -3'
miRNA:   3'- -CCGGCu-CUGCUGGUUCCAGcaca---GCG- -5'
18689 5' -55.4 NC_004682.1 + 14968 0.68 0.601353
Target:  5'- aGCCGAGACG-CCGAacacaccaggcguGGUCGaggcguUCGCg -3'
miRNA:   3'- cCGGCUCUGCuGGUU-------------CCAGCac----AGCG- -5'
18689 5' -55.4 NC_004682.1 + 170 0.69 0.57008
Target:  5'- aGCCGGGAC-ACCcgauaguGGGUgCGUGUCuGCc -3'
miRNA:   3'- cCGGCUCUGcUGGu------UCCA-GCACAG-CG- -5'
18689 5' -55.4 NC_004682.1 + 31083 0.69 0.524522
Target:  5'- cGCCGAGGCGcugaugcGCCGGGG-CGUGaagaucaaggagCGCa -3'
miRNA:   3'- cCGGCUCUGC-------UGGUUCCaGCACa-----------GCG- -5'
18689 5' -55.4 NC_004682.1 + 27235 0.71 0.437246
Target:  5'- cGCCGAGcAgGGCCAcacGGUCGUcggGUCGUu -3'
miRNA:   3'- cCGGCUC-UgCUGGUu--CCAGCA---CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 37382 0.71 0.422106
Target:  5'- gGGCCGGGGCGuACCGggugagguacucccgAGGcCGcagGUCGUg -3'
miRNA:   3'- -CCGGCUCUGC-UGGU---------------UCCaGCa--CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 33787 0.71 0.418371
Target:  5'- cGGCCaAGGCGgcucccGCCAAGGUgaccaaCGUgGUCGCu -3'
miRNA:   3'- -CCGGcUCUGC------UGGUUCCA------GCA-CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 9307 0.72 0.382151
Target:  5'- -aCCGcgaGGACGGCCAguGGGUCcagGUCGCg -3'
miRNA:   3'- ccGGC---UCUGCUGGU--UCCAGca-CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 639 0.72 0.373429
Target:  5'- uGGuCCGguugccucacccAGGCGACCGAGGUCGaccacauccGUCGUg -3'
miRNA:   3'- -CC-GGC------------UCUGCUGGUUCCAGCa--------CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 4570 0.73 0.356393
Target:  5'- uGGCCcu-GCGGCCAcccAGGUCGUGcucaacUCGCg -3'
miRNA:   3'- -CCGGcucUGCUGGU---UCCAGCAC------AGCG- -5'
18689 5' -55.4 NC_004682.1 + 13543 0.73 0.355555
Target:  5'- uGGCCGGGAUG-CCGgucuuggaugggcGGGUCuggGUGUUGCc -3'
miRNA:   3'- -CCGGCUCUGCuGGU-------------UCCAG---CACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 49654 0.73 0.348082
Target:  5'- gGGCCGAGACG-CUGAcGGUgGU-UCGCa -3'
miRNA:   3'- -CCGGCUCUGCuGGUU-CCAgCAcAGCG- -5'
18689 5' -55.4 NC_004682.1 + 9432 0.73 0.33991
Target:  5'- gGGaUCGGGAUGACCGggaccaucuccAGGUUGUG-CGCg -3'
miRNA:   3'- -CC-GGCUCUGCUGGU-----------UCCAGCACaGCG- -5'
18689 5' -55.4 NC_004682.1 + 43228 0.73 0.331879
Target:  5'- aGGCCGGGACGACCGccuGGaccggagCGUGgcgGCu -3'
miRNA:   3'- -CCGGCUCUGCUGGUu--CCa------GCACag-CG- -5'
18689 5' -55.4 NC_004682.1 + 16062 0.74 0.308627
Target:  5'- aGGUgGAGcagGCGGCCAGGaaGUCG-GUCGCa -3'
miRNA:   3'- -CCGgCUC---UGCUGGUUC--CAGCaCAGCG- -5'
18689 5' -55.4 NC_004682.1 + 17855 0.74 0.279589
Target:  5'- gGGCCGGGAUGugCGgugccAGGUuggucaccagCGUGUUGCc -3'
miRNA:   3'- -CCGGCUCUGCugGU-----UCCA----------GCACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 37047 0.75 0.2464
Target:  5'- aGGCCGAGACGguuccgauccACCGAGGcCGguucacgGUCGa -3'
miRNA:   3'- -CCGGCUCUGC----------UGGUUCCaGCa------CAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.