miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18689 5' -55.4 NC_004682.1 + 170 0.69 0.57008
Target:  5'- aGCCGGGAC-ACCcgauaguGGGUgCGUGUCuGCc -3'
miRNA:   3'- cCGGCUCUGcUGGu------UCCA-GCACAG-CG- -5'
18689 5' -55.4 NC_004682.1 + 639 0.72 0.373429
Target:  5'- uGGuCCGguugccucacccAGGCGACCGAGGUCGaccacauccGUCGUg -3'
miRNA:   3'- -CC-GGC------------UCUGCUGGUUCCAGCa--------CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 887 0.66 0.710469
Target:  5'- uGGCCcgcuauauGCGGCCAGGGuggcguUCGgucgGUCGCu -3'
miRNA:   3'- -CCGGcuc-----UGCUGGUUCC------AGCa---CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 1549 0.77 0.205495
Target:  5'- gGGCCGuGgccACGAUCAAGGUCGaGUCGa -3'
miRNA:   3'- -CCGGCuC---UGCUGGUUCCAGCaCAGCg -5'
18689 5' -55.4 NC_004682.1 + 2227 0.67 0.678369
Target:  5'- gGGCCuuGugGACCGguAGGUCccUGcUCGCc -3'
miRNA:   3'- -CCGGcuCugCUGGU--UCCAGc-AC-AGCG- -5'
18689 5' -55.4 NC_004682.1 + 4570 0.73 0.356393
Target:  5'- uGGCCcu-GCGGCCAcccAGGUCGUGcucaacUCGCg -3'
miRNA:   3'- -CCGGcucUGCUGGU---UCCAGCAC------AGCG- -5'
18689 5' -55.4 NC_004682.1 + 9307 0.72 0.382151
Target:  5'- -aCCGcgaGGACGGCCAguGGGUCcagGUCGCg -3'
miRNA:   3'- ccGGC---UCUGCUGGU--UCCAGca-CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 9432 0.73 0.33991
Target:  5'- gGGaUCGGGAUGACCGggaccaucuccAGGUUGUG-CGCg -3'
miRNA:   3'- -CC-GGCUCUGCUGGU-----------UCCAGCACaGCG- -5'
18689 5' -55.4 NC_004682.1 + 11863 0.67 0.667569
Target:  5'- cGCCGAGACGGCaccGGUCcaGUGggggaUGCu -3'
miRNA:   3'- cCGGCUCUGCUGguuCCAG--CACa----GCG- -5'
18689 5' -55.4 NC_004682.1 + 12045 1.13 0.000554
Target:  5'- uGGCCGAGACGACCAAGGUCGUGUCGCu -3'
miRNA:   3'- -CCGGCUCUGCUGGUUCCAGCACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 12127 0.66 0.731512
Target:  5'- cGGCCagcGAcACGACCuuGGUCGUcUCGg -3'
miRNA:   3'- -CCGG---CUcUGCUGGuuCCAGCAcAGCg -5'
18689 5' -55.4 NC_004682.1 + 12274 0.66 0.721034
Target:  5'- cGGCgCGAuccguGAgGGCCGcauccuGGGUCGUcccaccuacGUCGCg -3'
miRNA:   3'- -CCG-GCU-----CUgCUGGU------UCCAGCA---------CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 13543 0.73 0.355555
Target:  5'- uGGCCGGGAUG-CCGgucuuggaugggcGGGUCuggGUGUUGCc -3'
miRNA:   3'- -CCGGCUCUGCuGGU-------------UCCAG---CACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 14968 0.68 0.601353
Target:  5'- aGCCGAGACG-CCGAacacaccaggcguGGUCGaggcguUCGCg -3'
miRNA:   3'- cCGGCUCUGCuGGUU-------------CCAGCac----AGCG- -5'
18689 5' -55.4 NC_004682.1 + 15836 0.67 0.645882
Target:  5'- gGGauGGGACGAgUCGAGGUaCGcgcugGUCGCa -3'
miRNA:   3'- -CCggCUCUGCU-GGUUCCA-GCa----CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 16062 0.74 0.308627
Target:  5'- aGGUgGAGcagGCGGCCAGGaaGUCG-GUCGCa -3'
miRNA:   3'- -CCGgCUC---UGCUGGUUC--CAGCaCAGCG- -5'
18689 5' -55.4 NC_004682.1 + 16435 0.66 0.710469
Target:  5'- -uUCGAGACGGCCA--GUCGaccGUCGUu -3'
miRNA:   3'- ccGGCUCUGCUGGUucCAGCa--CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 16696 0.68 0.635015
Target:  5'- gGGCCuGGAgGGCUcGGGUCGaUGUCccgGCu -3'
miRNA:   3'- -CCGGcUCUgCUGGuUCCAGC-ACAG---CG- -5'
18689 5' -55.4 NC_004682.1 + 17855 0.74 0.279589
Target:  5'- gGGCCGGGAUGugCGgugccAGGUuggucaccagCGUGUUGCc -3'
miRNA:   3'- -CCGGCUCUGCugGU-----UCCA----------GCACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 20030 0.67 0.656736
Target:  5'- uGCgGGcGAUGGCCGcuGUgGUGUCGCc -3'
miRNA:   3'- cCGgCU-CUGCUGGUucCAgCACAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.