miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18689 5' -55.4 NC_004682.1 + 21849 0.68 0.624146
Target:  5'- gGGCCuGGGCGACUuccacuacuacgAGGGUUGgGUCGa -3'
miRNA:   3'- -CCGGcUCUGCUGG------------UUCCAGCaCAGCg -5'
18689 5' -55.4 NC_004682.1 + 23056 0.67 0.689126
Target:  5'- cGGaCUGGGugGACCu-GGUCGccuaCGCg -3'
miRNA:   3'- -CC-GGCUCugCUGGuuCCAGCaca-GCG- -5'
18689 5' -55.4 NC_004682.1 + 23714 0.68 0.613284
Target:  5'- gGGUCGcuGGCGACCGAGGUCcaucaggUGCu -3'
miRNA:   3'- -CCGGCu-CUGCUGGUUCCAGcaca---GCG- -5'
18689 5' -55.4 NC_004682.1 + 27130 0.66 0.721034
Target:  5'- uGGCCGAGAC-AUCGAGGUCu------ -3'
miRNA:   3'- -CCGGCUCUGcUGGUUCCAGcacagcg -5'
18689 5' -55.4 NC_004682.1 + 27235 0.71 0.437246
Target:  5'- cGCCGAGcAgGGCCAcacGGUCGUcggGUCGUu -3'
miRNA:   3'- cCGGCUC-UgCUGGUu--CCAGCA---CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 31083 0.69 0.524522
Target:  5'- cGCCGAGGCGcugaugcGCCGGGG-CGUGaagaucaaggagCGCa -3'
miRNA:   3'- cCGGCUCUGC-------UGGUUCCaGCACa-----------GCG- -5'
18689 5' -55.4 NC_004682.1 + 31462 0.66 0.710469
Target:  5'- gGGCCuGggguccaccaGGugGGCCAGGaucuUCGUGUCGg -3'
miRNA:   3'- -CCGG-C----------UCugCUGGUUCc---AGCACAGCg -5'
18689 5' -55.4 NC_004682.1 + 32657 0.66 0.731512
Target:  5'- uGCCGGuGACGACCAucggugaguuGGUCaUGUUcgGCa -3'
miRNA:   3'- cCGGCU-CUGCUGGUu---------CCAGcACAG--CG- -5'
18689 5' -55.4 NC_004682.1 + 33787 0.71 0.418371
Target:  5'- cGGCCaAGGCGgcucccGCCAAGGUgaccaaCGUgGUCGCu -3'
miRNA:   3'- -CCGGcUCUGC------UGGUUCCA------GCA-CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 34995 0.67 0.656736
Target:  5'- -uCCGGGAacUGACCGAGGggaugGUCGCc -3'
miRNA:   3'- ccGGCUCU--GCUGGUUCCagca-CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 36301 0.67 0.682677
Target:  5'- aGCUGAcucccGACGaacggacuggcgaguGCCAGGGcCGUcGUCGCg -3'
miRNA:   3'- cCGGCU-----CUGC---------------UGGUUCCaGCA-CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 37047 0.75 0.2464
Target:  5'- aGGCCGAGACGguuccgauccACCGAGGcCGguucacgGUCGa -3'
miRNA:   3'- -CCGGCUCUGC----------UGGUUCCaGCa------CAGCg -5'
18689 5' -55.4 NC_004682.1 + 37382 0.71 0.422106
Target:  5'- gGGCCGGGGCGuACCGggugagguacucccgAGGcCGcagGUCGUg -3'
miRNA:   3'- -CCGGCUCUGC-UGGU---------------UCCaGCa--CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 40351 0.67 0.645882
Target:  5'- cGaaGAGAUGACCAGGGUCa---CGCu -3'
miRNA:   3'- cCggCUCUGCUGGUUCCAGcacaGCG- -5'
18689 5' -55.4 NC_004682.1 + 43228 0.73 0.331879
Target:  5'- aGGCCGGGACGACCGccuGGaccggagCGUGgcgGCu -3'
miRNA:   3'- -CCGGCUCUGCUGGUu--CCa------GCACag-CG- -5'
18689 5' -55.4 NC_004682.1 + 43895 0.66 0.735677
Target:  5'- aGGCCcagGAGAUGuucaaggaggaguacGCCAAaGagGUGUCGCa -3'
miRNA:   3'- -CCGG---CUCUGC---------------UGGUUcCagCACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 44167 0.66 0.752167
Target:  5'- gGGUCgGAGACGACgAcGGGaUCGUGggucgagUGCa -3'
miRNA:   3'- -CCGG-CUCUGCUGgU-UCC-AGCACa------GCG- -5'
18689 5' -55.4 NC_004682.1 + 46691 0.66 0.741894
Target:  5'- cGCCGaAGAUGugCAgcaccGGGUaccgCGUGcCGCu -3'
miRNA:   3'- cCGGC-UCUGCugGU-----UCCA----GCACaGCG- -5'
18689 5' -55.4 NC_004682.1 + 47692 0.66 0.752167
Target:  5'- uGGCUGaAGGCaaggucuCCGAGGcCG-GUCGCc -3'
miRNA:   3'- -CCGGC-UCUGcu-----GGUUCCaGCaCAGCG- -5'
18689 5' -55.4 NC_004682.1 + 48183 0.66 0.752167
Target:  5'- cGCCGAGuCGACCGAG--UGaUGcUCGCc -3'
miRNA:   3'- cCGGCUCuGCUGGUUCcaGC-AC-AGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.