miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18689 5' -55.4 NC_004682.1 + 44167 0.66 0.752167
Target:  5'- gGGUCgGAGACGACgAcGGGaUCGUGggucgagUGCa -3'
miRNA:   3'- -CCGG-CUCUGCUGgU-UCC-AGCACa------GCG- -5'
18689 5' -55.4 NC_004682.1 + 15836 0.67 0.645882
Target:  5'- gGGauGGGACGAgUCGAGGUaCGcgcugGUCGCa -3'
miRNA:   3'- -CCggCUCUGCU-GGUUCCA-GCa----CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 36301 0.67 0.682677
Target:  5'- aGCUGAcucccGACGaacggacuggcgaguGCCAGGGcCGUcGUCGCg -3'
miRNA:   3'- cCGGCU-----CUGC---------------UGGUUCCaGCA-CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 23056 0.67 0.689126
Target:  5'- cGGaCUGGGugGACCu-GGUCGccuaCGCg -3'
miRNA:   3'- -CC-GGCUCugCUGGuuCCAGCaca-GCG- -5'
18689 5' -55.4 NC_004682.1 + 31462 0.66 0.710469
Target:  5'- gGGCCuGggguccaccaGGugGGCCAGGaucuUCGUGUCGg -3'
miRNA:   3'- -CCGG-C----------UCugCUGGUUCc---AGCACAGCg -5'
18689 5' -55.4 NC_004682.1 + 12274 0.66 0.721034
Target:  5'- cGGCgCGAuccguGAgGGCCGcauccuGGGUCGUcccaccuacGUCGCg -3'
miRNA:   3'- -CCG-GCU-----CUgCUGGU------UCCAGCA---------CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 27130 0.66 0.721034
Target:  5'- uGGCCGAGAC-AUCGAGGUCu------ -3'
miRNA:   3'- -CCGGCUCUGcUGGUUCCAGcacagcg -5'
18689 5' -55.4 NC_004682.1 + 32657 0.66 0.731512
Target:  5'- uGCCGGuGACGACCAucggugaguuGGUCaUGUUcgGCa -3'
miRNA:   3'- cCGGCU-CUGCUGGUu---------CCAGcACAG--CG- -5'
18689 5' -55.4 NC_004682.1 + 46691 0.66 0.741894
Target:  5'- cGCCGaAGAUGugCAgcaccGGGUaccgCGUGcCGCu -3'
miRNA:   3'- cCGGC-UCUGCugGU-----UCCA----GCACaGCG- -5'
18689 5' -55.4 NC_004682.1 + 49515 0.68 0.635015
Target:  5'- aGCCGuGACGGCCAua--CcUGUCGCg -3'
miRNA:   3'- cCGGCuCUGCUGGUuccaGcACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 16696 0.68 0.635015
Target:  5'- gGGCCuGGAgGGCUcGGGUCGaUGUCccgGCu -3'
miRNA:   3'- -CCGGcUCUgCUGGuUCCAGC-ACAG---CG- -5'
18689 5' -55.4 NC_004682.1 + 21849 0.68 0.624146
Target:  5'- gGGCCuGGGCGACUuccacuacuacgAGGGUUGgGUCGa -3'
miRNA:   3'- -CCGGcUCUGCUGG------------UUCCAGCaCAGCg -5'
18689 5' -55.4 NC_004682.1 + 1549 0.77 0.205495
Target:  5'- gGGCCGuGgccACGAUCAAGGUCGaGUCGa -3'
miRNA:   3'- -CCGGCuC---UGCUGGUUCCAGCaCAGCg -5'
18689 5' -55.4 NC_004682.1 + 16062 0.74 0.308627
Target:  5'- aGGUgGAGcagGCGGCCAGGaaGUCG-GUCGCa -3'
miRNA:   3'- -CCGgCUC---UGCUGGUUC--CAGCaCAGCG- -5'
18689 5' -55.4 NC_004682.1 + 4570 0.73 0.356393
Target:  5'- uGGCCcu-GCGGCCAcccAGGUCGUGcucaacUCGCg -3'
miRNA:   3'- -CCGGcucUGCUGGU---UCCAGCAC------AGCG- -5'
18689 5' -55.4 NC_004682.1 + 639 0.72 0.373429
Target:  5'- uGGuCCGguugccucacccAGGCGACCGAGGUCGaccacauccGUCGUg -3'
miRNA:   3'- -CC-GGC------------UCUGCUGGUUCCAGCa--------CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 9307 0.72 0.382151
Target:  5'- -aCCGcgaGGACGGCCAguGGGUCcagGUCGCg -3'
miRNA:   3'- ccGGC---UCUGCUGGU--UCCAGca-CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 37382 0.71 0.422106
Target:  5'- gGGCCGGGGCGuACCGggugagguacucccgAGGcCGcagGUCGUg -3'
miRNA:   3'- -CCGGCUCUGC-UGGU---------------UCCaGCa--CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 170 0.69 0.57008
Target:  5'- aGCCGGGAC-ACCcgauaguGGGUgCGUGUCuGCc -3'
miRNA:   3'- cCGGCUCUGcUGGu------UCCA-GCACAG-CG- -5'
18689 5' -55.4 NC_004682.1 + 23714 0.68 0.613284
Target:  5'- gGGUCGcuGGCGACCGAGGUCcaucaggUGCu -3'
miRNA:   3'- -CCGGCu-CUGCUGGUUCCAGcaca---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.