Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18689 | 5' | -55.4 | NC_004682.1 | + | 23714 | 0.68 | 0.613284 |
Target: 5'- gGGUCGcuGGCGACCGAGGUCcaucaggUGCu -3' miRNA: 3'- -CCGGCu-CUGCUGGUUCCAGcaca---GCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 14968 | 0.68 | 0.601353 |
Target: 5'- aGCCGAGACG-CCGAacacaccaggcguGGUCGaggcguUCGCg -3' miRNA: 3'- cCGGCUCUGCuGGUU-------------CCAGCac----AGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 31083 | 0.69 | 0.524522 |
Target: 5'- cGCCGAGGCGcugaugcGCCGGGG-CGUGaagaucaaggagCGCa -3' miRNA: 3'- cCGGCUCUGC-------UGGUUCCaGCACa-----------GCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 27235 | 0.71 | 0.437246 |
Target: 5'- cGCCGAGcAgGGCCAcacGGUCGUcggGUCGUu -3' miRNA: 3'- cCGGCUC-UgCUGGUu--CCAGCA---CAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 33787 | 0.71 | 0.418371 |
Target: 5'- cGGCCaAGGCGgcucccGCCAAGGUgaccaaCGUgGUCGCu -3' miRNA: 3'- -CCGGcUCUGC------UGGUUCCA------GCA-CAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 13543 | 0.73 | 0.355555 |
Target: 5'- uGGCCGGGAUG-CCGgucuuggaugggcGGGUCuggGUGUUGCc -3' miRNA: 3'- -CCGGCUCUGCuGGU-------------UCCAG---CACAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 49654 | 0.73 | 0.348082 |
Target: 5'- gGGCCGAGACG-CUGAcGGUgGU-UCGCa -3' miRNA: 3'- -CCGGCUCUGCuGGUU-CCAgCAcAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 9432 | 0.73 | 0.33991 |
Target: 5'- gGGaUCGGGAUGACCGggaccaucuccAGGUUGUG-CGCg -3' miRNA: 3'- -CC-GGCUCUGCUGGU-----------UCCAGCACaGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 43228 | 0.73 | 0.331879 |
Target: 5'- aGGCCGGGACGACCGccuGGaccggagCGUGgcgGCu -3' miRNA: 3'- -CCGGCUCUGCUGGUu--CCa------GCACag-CG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 40351 | 0.67 | 0.645882 |
Target: 5'- cGaaGAGAUGACCAGGGUCa---CGCu -3' miRNA: 3'- cCggCUCUGCUGGUUCCAGcacaGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 34995 | 0.67 | 0.656736 |
Target: 5'- -uCCGGGAacUGACCGAGGggaugGUCGCc -3' miRNA: 3'- ccGGCUCU--GCUGGUUCCagca-CAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 20030 | 0.67 | 0.656736 |
Target: 5'- uGCgGGcGAUGGCCGcuGUgGUGUCGCc -3' miRNA: 3'- cCGgCU-CUGCUGGUucCAgCACAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 37047 | 0.75 | 0.2464 |
Target: 5'- aGGCCGAGACGguuccgauccACCGAGGcCGguucacgGUCGa -3' miRNA: 3'- -CCGGCUCUGC----------UGGUUCCaGCa------CAGCg -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 47692 | 0.66 | 0.752167 |
Target: 5'- uGGCUGaAGGCaaggucuCCGAGGcCG-GUCGCc -3' miRNA: 3'- -CCGGC-UCUGcu-----GGUUCCaGCaCAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 43895 | 0.66 | 0.735677 |
Target: 5'- aGGCCcagGAGAUGuucaaggaggaguacGCCAAaGagGUGUCGCa -3' miRNA: 3'- -CCGG---CUCUGC---------------UGGUUcCagCACAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 12127 | 0.66 | 0.731512 |
Target: 5'- cGGCCagcGAcACGACCuuGGUCGUcUCGg -3' miRNA: 3'- -CCGG---CUcUGCUGGuuCCAGCAcAGCg -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 887 | 0.66 | 0.710469 |
Target: 5'- uGGCCcgcuauauGCGGCCAGGGuggcguUCGgucgGUCGCu -3' miRNA: 3'- -CCGGcuc-----UGCUGGUUCC------AGCa---CAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 16435 | 0.66 | 0.710469 |
Target: 5'- -uUCGAGACGGCCA--GUCGaccGUCGUu -3' miRNA: 3'- ccGGCUCUGCUGGUucCAGCa--CAGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 2227 | 0.67 | 0.678369 |
Target: 5'- gGGCCuuGugGACCGguAGGUCccUGcUCGCc -3' miRNA: 3'- -CCGGcuCugCUGGU--UCCAGc-AC-AGCG- -5' |
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18689 | 5' | -55.4 | NC_004682.1 | + | 11863 | 0.67 | 0.667569 |
Target: 5'- cGCCGAGACGGCaccGGUCcaGUGggggaUGCu -3' miRNA: 3'- cCGGCUCUGCUGguuCCAG--CACa----GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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